Glycine max (soybean): 100804778
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Entry
100804778 CDS
T01710
Name
(RefSeq) serine/arginine-rich splicing factor SR45
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
gmx
Glycine max (soybean)
Pathway
gmx03013
Nucleocytoplasmic transport
gmx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100804778
03015 mRNA surveillance pathway
100804778
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100804778
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100804778
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_ACIN1
RRM_occluded
RRM_10
RRM_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
100804778
NCBI-ProteinID:
XP_003531499
UniProt:
I1KU45
LinkDB
All DBs
Position
8:13776461..13781842
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AA seq
422 aa
AA seq
DB search
MAKPGRGRRSHSGSVSGSSSRSSSPSDSRSSSRSRSVSRSRSPSRSRSSSPSSSSPSRSS
RSRSPPPQRRRSPADAARRGRSPPPQSKRASPPPRKPSPVRESLVLHVEKLSRNVNEGHL
KEIFSNFGEVISVELAMDRTVNLPKGYGYVQFKTRGEAEKALLYMDGAQIDGNVIKARFT
LPPRQKVSPPPKTSAVAPKREIPRTDNASADVDKDGPKRQRESSPRRKPPPSPRRRSPVP
RRAGSPRRPDSPRRRADSPVRRRVDSPYRRGGDTPPRRRPVSPGRGRSPSPPRRLRSPAR
LSPRRMRGSPGRRRSPPPPPRRRSPPRRPRSPPRRSPIGRRRTRSPIRRSARSRSRSFSP
RRGRPPVRRGRSSSYSDSPSPRKVSRRSKSRSPRRPLRGRGSSNSSSSSSPPPPPPPPPR
KP
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaacccgggcgaggtcgtcgctctcactccggctccgtttccggctcctcctct
cgctcctcttccccctccgactcccgctcctcctctcgctcgcgctccgtttctcgttcc
cgctctccctcgcgctccagatcctcctctccctcctcctcgtctccctcccgaagttct
cgcagccgcagccctcccccacagcgccgccgaagtcctgctgatgcagctaggcgaggt
cggtctcctccacctcaatctaagagagcttcacctcccccaaggaaaccttctcctgta
cgtgaatcacttgttcttcatgtagaaaagctcagcagaaatgtcaatgaagggcatttg
aaagaaattttcagtaactttggtgaggttataagtgtggagttggcaatggatcgaact
gtcaatcttccaaaagggtatggatatgtgcagttcaagacaagaggggaggctgaaaaa
gcattattgtacatggatggtgcccaaatagatggcaatgtcatcaaggcaagatttact
ctacctccaaggcagaaagtttcaccacccccaaagacttctgctgttgctccaaagaga
gagatccccaggactgataatgctagcgcagatgttgacaaggatggaccaaaacggcaa
agagaatcttctcctcgtagaaaacctcctccctcaccacggaggagatctcctgtacct
agaagagctggatctccaagacgaccagattctccacgccgtcgtgcagattctcctgtc
cgtcgccgagtagactctccttatcgtcgtggaggagacacacctcctaggaggcggcct
gtgtctcctggaagaggtcgttctccatctccacctagacgccttagatcccctgcaagg
ctgtcacctagaaggatgcgtggaagcccaggtcgaagacgttcacctccacctcctccc
aggcgccgatcaccacctagacgaccacgtagtcctcctagaaggtctccaattggtcgt
agacgtactcgctctccaatacgtaggtctgcgcgctcacgctcaaggtcattctcacct
cgcagaggtagaccaccggttagacggggaaggtcatcatcctactctgattccccaagt
ccacgcaaggtatcccgtagatcaaagagtcggagcccaagaaggcctttgagaggaaga
ggcagtagcaacagcagcagcagcagttcaccaccaccaccaccaccacctccacctcgc
aagccatag
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