Glycine max (soybean): 100805571
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Entry
100805571 CDS
T01710
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
gmx
Glycine max (soybean)
Pathway
gmx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100805571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gmx03041
]
100805571
Enzymes [BR:
gmx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100805571
Spliceosome [BR:
gmx03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
100805571
Complex B
100805571
Complex C
U2 SnRNP specific factors
100805571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
UBA_HOIP
Cwf_Cwc_15
Motif
Other DBs
NCBI-GeneID:
100805571
NCBI-ProteinID:
XP_003521597
UniProt:
I1JQT4
LinkDB
All DBs
Position
3:43526620..43531480
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AA seq
782 aa
AA seq
DB search
MSKRKFGFEGFGINRQSTYSFERPQAPQRLYIPPSARHGHDHYEDTDIDNIDYDDNNSNN
NNNKDDDDDYGSNNNNGGGNDEDEIDPLDAFMEGIHEEMRAAPPPKPKEKAEDRYRDDED
DDPMESFLMAKKDLGLTLASDALHAGYDSDEEVYAAAKAVDAGMIEYDSDDNPIVIDKKK
IEPIPALDHSSIDYEPFTKDFYEETPSISGMSEQDVSEYRKSLAIRVSGFDVPKPIKAFE
DCGFSSQIMNAIKKQGYEKPTTIQCQALPVVLSGRDIIGIAKTGSGKTASFVLPMIVHIM
DQPELQKEEGPIGVICAPTRELAHQIFLEAKKFAKAYGVRVSAVYGGMSKLEQFKELKAG
CEIVVATPGRLIDMLKMKALTMMRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLL
FSATMPCKVEKLAREILSDPIRVTVGEVGMANEDITQVVHVTPSDSEKLPWLLEKLPEMI
DQGDTLVFASKKATVDEIESQLAQRGFKVAALHGDKDQASRMDILQKFKSGLYHVLIATD
VAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITLKEARFAGELVN
SLVAAGQNVSVELMDLAMKDGRFRSKRDARKGGGKKGKGRGGGGGGGRGVRGVDFGLGIG
YNPESNNAPSTTAPSRSAAVNSLRTGMMSQFKSNFVAASSNSQNQGFGNNTSMTANKRTA
LPGFVSGGSIGGDINTYQSTASPNPATSAVISTSQGYGVNPGQKSTNSSKPKERRRPSGW
DR
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaggaagttcggattcgaaggtttcggcataaaccgccaatccacctacagc
ttcgagcgaccccaggcccctcagcgactctacatccctccctccgcgcgtcacggccac
gaccactacgaagacaccgacatcgacaacatcgactacgacgacaacaacagcaacaac
aacaacaacaaggacgacgacgacgattacgggagcaataataacaacggtggcggcaac
gacgaagacgaaatcgaccccttggacgccttcatggaggggattcacgaggagatgcgg
gcggccccgccgccgaagccgaaggagaaggcggaggaccggtaccgcgacgacgaggac
gacgatcccatggagagctttctgatggcgaagaaggatttagggttaactctcgcgtcg
gacgcgctgcacgctgggtatgattccgatgaggaggtttatgctgccgcgaaagctgta
gacgctggtatgattgagtatgattccgatgataaccctattgttattgacaagaagaag
attgaacccattcctgctcttgatcactcttccattgattacgagcccttcactaaggat
ttttatgaggagacaccttcaatatcaggtatgagtgagcaggatgtaagtgaatacagg
aagagtttggctattcgtgtatcaggttttgatgttcccaagccaataaaggcatttgag
gactgtgggttttcttcacagattatgaatgctattaaaaaacaaggatatgagaagccg
acaactatacaatgtcaggctttgccagttgtgctttctggcagggatatcattggtata
gcaaaaactggttctggtaaaactgcttcttttgtacttcctatgatcgtgcatatcatg
gatcagcctgagcttcagaaggaggaggggcccataggggtgatatgtgcacctacccga
gaattggcacatcagatttttctggaggccaagaaatttgcaaaagcgtatggggtacgt
gtctctgctgtctatggtggaatgtcaaaacttgaacagttcaaagagcttaaggcggga
tgtgagatagttgttgctacccctggcagattgatagacatgctgaagatgaaggcattg
acgatgatgagagcaacttacctggtgcttgatgaggctgatcggatgtttgatcttggg
tttgagccgcaagtaaggtccattgttgggcagattaggccggaccgccaaaccttactc
ttttctgcaactatgccttgtaaagttgaaaagttggccagggaaatcctttctgatcct
attagagttactgttggagaggtggggatggcaaatgaagatattactcaagttgttcac
gtaactccttccgattctgagaaattgccctggcttttggaaaagctgcctgaaatgatt
gatcaaggtgataccctagtttttgcttcgaaaaaggctactgtggatgaaattgaatca
caattggctcaaagaggctttaaagttgctgcattgcatggtgataaagatcaagcttct
cgtatggatattttacagaagtttaaatctggcctctaccatgtgctaattgcaactgat
gttgctgcccgtggtcttgacatcaagtcaattaagtcagtggtaaactttgatattgca
aaagatatggacatgcatgtccatcgcattggaagaacaggccgtgctggtgacaaggac
ggggttgcatacactcttataactctgaaagaagcacgatttgctggtgaattggtcaat
agcttagttgctgctggtcagaatgtgtctgtggagttgatggatcttgctatgaaggat
gggagattcaggtcaaaacgtgatgcaagaaaaggaggtgggaaaaaaggcaaaggtaga
ggaggaggtggtgggggtggccgaggtgtgcgaggagtggattttggcctgggcattgga
tataatcctgagtcaaataatgcaccatctaccacagctcccagtcgatctgccgctgta
aattctctgcgaacaggaatgatgtcacaattcaagagtaactttgttgctgcttcatca
aactctcagaatcaaggctttggtaacaatacaagcatgactgctaataagagaacagca
ctccctggttttgtatccggtggatcaattggtggtgacataaatacttatcagagtact
gcttcacccaatcctgctacatcagcggtaatttccaccagtcaaggttatggagtaaat
cctggtcagaagagcacgaacagttctaaacctaaagaaaggcggagaccatcaggttgg
gatagatag
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