Glycine max (soybean): 100806136
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Entry
100806136 CDS
T01710
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
gmx
Glycine max (soybean)
Pathway
gmx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100806136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmx03021
]
100806136
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100806136
Transcription machinery [BR:
gmx03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100806136
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
100806136
U7-dependent histone pre-mRNA processing factors
100806136
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
HAMP_2
Motif
Other DBs
NCBI-GeneID:
100806136
NCBI-ProteinID:
XP_006592669
UniProt:
K7LVE4
LinkDB
All DBs
Position
12:complement(33867591..33874949)
Genome browser
AA seq
689 aa
AA seq
DB search
MNNCTAKRRENARSSREEDQLIVTPLGAGNEVGRSCVYMSYKGKTVLFDCGIHPAYSGMA
ALPYFDEIDPSTVDVLLITHFHLDHAASLPYFLEKTTFRGRVFMTYATKAIYKLLLSDFV
KVSKVSVEDMLFDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIAG
VRVLYTGDYSREEDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTIS
QGGRVLIPAFALGRAQELLLILDEYWANHPELQNIPIYYASPLAKKCLTVYETYTLSMND
RIQNAKSNPFSFKHVSALSSIEVFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNSCV
LPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADSAQTSAFLEELNPPN
IILVHGEANEMGRLKQKLISQFADRNTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKTPE
VGETVSGLLVKKGFTYQIMAADDLHVFSQLSTANITQRITIPYSGAFNVIQHRLKQIYES
VAQSVDEESGVPTLQVHECVTVKHESEKHVSLHWASDPMSDMVSDSIVALVLNINRDVPK
IVNESDAIKIEEENEKKAEKVMQALLVSLFGDVKVGENGKLIINIDGNVAELNKESGEVE
SENEGLKERVRTAFRRIQSSVKPIPVSAP
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgaataattgtacggcgaagagacgtgagaatgcgaggagcagcagagaggaagatcaa
ctgatagtgactccattgggcgctggaaatgaagtgggtcgttcatgcgtctacatgtcc
tacaaaggcaagacggtcttgttcgattgtggaatacacccagcttactctggcatggct
gctttgccctatttcgacgagattgacccttccacagtcgatgttcttctcatcactcac
tttcacttggatcatgctgcttccttgccctattttctcgagaaaaccaccttccgaggc
cgtgttttcatgacctacgccaccaaggccatttacaagctccttttgtctgattttgtc
aaggtcagcaaggtctccgtcgaagacatgctttttgacgaacaggacatcaaccgctcc
atggataaaattgaggttattgattttcatcagacagtagaagtcaatggtattagattc
tggtgttatactgcaggccatgtccttggtgctgctatgttcatggttgacatagccggt
gttcgagtgctttacaccggagactattcacgtgaggaagaccgccatctccgagctgct
gagaccccacagttctcccctgatgtatgcattatagaatccacctatggtgtacagcac
catcagcctcgccacacacgcgaaaaacgcttcactgatgttatccactcaaccatttct
caagggggtcgtgtgttgattccagcatttgcccttggccgtgcacaggagctcctcctt
atccttgatgaatattgggcaaatcatcctgaactccagaatatacccatctattatgct
tctccacttgcaaaaaaatgtttgactgtgtatgaaacatacaccctttccatgaatgac
aggatccagaatgcaaagtcaaatccgttttcctttaagcacgtatcggctttaagtagc
attgaagttttcaaagatgtaggaccatctgtggtgatggcaagccctggtggacttcag
agtggcttgtcacgacaattatttgatatgtggtgctctgataagaaaaattcttgtgtt
ttaccagggtatgtagttgaagggacattggcaaaaaccatcatcaatgagcccaaggaa
gttactctcatgaatggactcactgcacctcttaacatgcaggtgcactacatttccttt
tctgctcatgctgactctgctcaaacaagtgcgttcttagaagagctcaatcctcctaac
ataattcttgttcatggagaagctaatgagatgggcaggctcaagcagaagctcataagt
caatttgctgatcgcaacactaaaattcttactccaaaaaactgtcaatctgttgaaatg
tatttcaattcgcagaaaatggcaaaaaccatagggaagctggctgaaaaaacaccagaa
gttggtgaaactgtcagtggtttgcttgtaaaaaaaggcttcacatatcagattatggca
gctgatgatctccatgtcttttcacaactatcaacagcaaacattactcagaggattacc
atcccttattcaggtgcctttaatgtcatacagcatagactcaaacagatatatgaaagt
gtagctcagtcagtggatgaagaatctggagttcccacattgcaagtccatgagtgtgtt
actgtgaaacatgaatctgaaaagcatgtctccttgcattgggcctctgatcccatgagt
gacatggtatctgattcaattgttgctctggttttaaatatcaaccgcgatgtcccaaaa
atagtgaatgaatctgatgccattaagattgaggaagagaatgagaaaaaggcagagaag
gttatgcaagccctcctcgtttcactctttggagatgtgaaggtaggtgaaaacggaaaa
ttgataattaacattgatgggaatgtagcagagctaaacaaagaaagtggggaagttgag
agtgaaaatgaaggtctcaaggaaagagtaagaacagcattccggcgcattcaaagttct
gtgaagccaattcctgtttctgcgccatag
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