Glycine max (soybean): 100806141
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Entry
100806141 CDS
T01710
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
gmx
Glycine max (soybean)
Pathway
gmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100806141
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100806141
03012 Translation factors [BR:
gmx03012
]
100806141
Enzymes [BR:
gmx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100806141
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100806141
Translation factors [BR:
gmx03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
100806141
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
OB_NTP_bind
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
T2SSE
Dicer_dimer
AAA_16
AAA_19
NPHP3_N
nSTAND3
ATPase
Motif
Other DBs
NCBI-GeneID:
100806141
NCBI-ProteinID:
XP_003524350
UniProt:
I1K5G0
LinkDB
All DBs
Position
5:41804324..41815034
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AA seq
1180 aa
AA seq
DB search
MPMTYSGIFQGFIRFKATSRLRSAPLRHSLPSISSAPFHRTAIRLRHHSCSAALQVVKNT
RQRTFKFPFWHQRSSTYGRFAYQDVSSDESDVEFASSPSHNQQLGDSTHENIDDWRWKLT
MLMRNKDEQEAVSREKKDRRDFEQLSTLATRMGLYSRQYARVVVFSKAPLPNYRPDLDDK
RPQREVVLPLGVHKEVDAHLLAHLSQKARNKWDFMEDSLHNSSDSRSIPANERMYEQPEP
VTHNSVVKEKILQRKSLQLHHQQQDWQESPEGQKMLEFRRSLPAFKEKDAFLRVISQSQV
VVVSGETGCGKTTQLPQYILESEIEAARGAVCNIICTQPRRISAMSVSERVAAERGEKLG
ESVGYKVRLEGMKGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLI
VLKELLHHRPDLRLILMSATLNAELFSSYFNGAPTMHIPGFTFPVRAHFLEDILERTGYR
LTPYNQIDDYGQEKTWKMQKQAQAFRKRKSHIASAVEDALEVAEFKGYSLRTQDSLSCWY
PDSIGFNLIEHVLCHIVKNERSGAVLVFMTGWDDITSLKDQLQAHPLLGDQSRVLLLACH
GSMASSEQRLIFENPEGGVRKIVLATNMAETSITINDVVFVVDIGKAKETSYDALNNTPC
LLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKT
LQLGSISEFLSRALQPPEPLSVQNAIEYLKIIGALDENENLTVLGHKLAMLPVEPKLGKM
LILGAIFKCLDPIMTIVAGLSVRDPFVMPSDKKDLAESAKAQFAARDYSDHLALIRAYDG
WRDAEAQQAGYEYCWRNFLSSQTLRAIDSLRKQFFYLLKDICLVNNNSETYNTWSHEEHL
LRAVICAGLFPGISSVVNKDKSIALKTMEDGQVLLYSSSVNGCVPRIPFPWLVFNEKVKV
NSVFLRDSTGISDSVLLLFGGNVSRGGLDGHLKMLGGYLEFFMKPELAKTYLSLKMGLEE
LIQKKLLDPMLETQSHSELLSAVRLLVSEDHCDGRFVFGRQVLPQSKKETNSKTGGVAEE
KNYKNHLQAFLNRAGHDSPTYKTKELKNNQFRSTVIFNGLNFVGQPCSSKKLAEKSAAAE
ALLWLKGDSHSSDDIDHASVLLKKSNKKSRKNSFSSAKWS
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgcctatgacctattccggcatatttcagggcttcatcagattcaaagccacgtcgcgg
cttcgttccgctcctctcagacattctcttccctccatttcatccgctccttttcaccgc
accgccattcgcctccgccaccactcctgctccgccgcgcttcaagtcgtcaagaacacg
cgccagaggaccttcaagtttccgttttggcaccaacgcagctccacctatggtcgtttc
gcctaccaggacgtctccagtgacgaatccgatgtcgaattcgcgtcttctccctctcac
aaccaacaactgggtgattcaactcacgagaacattgacgattggagatggaagctcacc
atgcttatgcgcaacaaagacgaacaagaagcggtgtccagggagaagaaggaccgtcgc
gatttcgagcaactttccactttagctaccaggatgggtttgtatagccggcagtatgca
agagttgttgtgtttagcaaggcgcctttgccaaactaccgccctgatttggatgataag
cgtccacaaagagaggtagtcttaccacttggtgttcataaagaagtagacgctcatctc
cttgcccatctttcacaaaaggctagaaacaagtgggattttatggaagattccttgcat
aactcaagtgattctagaagcattccagccaatgaaagaatgtatgaacagccagagccc
gtgacccataatagtgttgtcaaggagaaaatccttcaacgaaaaagtttgcaactgcat
catcagcaacaggattggcaggagtctcctgaagggcaaaagatgcttgaatttcgtaga
agtcttcctgctttcaaagagaaggatgcatttctgagagttatttcacagagtcaggtc
gtcgttgtctcaggtgaaactggttgtggtaagaccacacaacttcctcaatacatatta
gaatctgagattgaagctgcacgtggagctgtatgtaacataatctgtactcagcctaga
agaatatctgctatgtctgtttctgaaagagttgcagcagagcgtggggagaaattggga
gaatctgttggatacaaagttcgcctggagggtatgaaagggagagatactcgtcttctt
ttttgcaccacaggtgtattattgcggagattgcttgtggataggaatttaaaaggtgta
actcatgttattgttgatgaaattcatgaacgtggaatgaatgaagattttcttctcatt
gtcttgaaggaacttctccatcatcgtcctgatttgaggttgattttgatgagtgcaacc
ttaaatgctgagctattttcttcatactttaatggtgctccaactatgcatattcctggt
tttacatttccagttcgagcacattttcttgaggacattctggaaaggactggatatcga
ttgacaccgtataatcaaattgatgactatggtcaagaaaaaacatggaaaatgcagaag
caagctcaagctttcagaaaaagaaagagccacattgcttctgctgttgaggatgcttta
gaagttgcagaatttaaggggtatagcctacgcactcaagattcattgtcctgctggtac
cctgactcaattggttttaaccttattgaacatgtgctttgccatattgttaagaatgaa
aggtcaggtgctgttttggtttttatgactggttgggatgatataacctctttgaaggat
caacttcaagctcatcctttgttgggtgatcagagccgagtattgcttcttgcatgccac
ggctccatggccagctctgagcagaggttgatatttgaaaatcctgaaggaggggtgagg
aaaattgttcttgcaactaacatggctgagactagtattaccatcaatgatgttgtcttt
gtggttgacattggaaaagcaaaagaaacatcatatgatgcattaaataacactccttgt
ttgcttccatcttggatatcaaaagctgctgctcggcagagaagaggaagggctggtcgt
gttcaacctggtgaatgctaccatctttatcccagatgtgtttatgatgcttttgctgat
tatcaattgccagagcttttgagaacacctttgcagtccttatgtctgcaaatcaaaact
ctacaacttggaagcatctctgagtttttatctagagctctacagccaccagagcctcta
tcggttcaaaatgctattgaatatttgaagattattggggccttagatgagaatgaaaat
ttaacagttttagggcacaaattggcaatgcttcctgtggagcccaaacttggcaagatg
ctcattttgggagctatcttcaagtgtttggatcccataatgactattgttgctggtctt
agtgtaagagatccatttgtaatgccgtctgacaagaaggatcttgcagagtctgccaaa
gcccaatttgctgctcgtgactatagtgatcatcttgcactcatccgggcttatgatggt
tggagagatgctgaagcgcagcaagctggttacgagtactgttggcgaaattttctttct
tctcaaacacttagggccattgactctcttcgaaagcaattcttttatttgctcaaagat
atttgtctggttaataacaattctgaaacctacaatacatggagtcatgaagagcatcta
ctccgagcagtcatctgtgcgggtttgtttcccggaatatcctctgttgtgaacaaagat
aagtcaatagcactgaaaacaatggaggatggtcaggttcttttgtattctagctctgta
aatggttgtgtaccccgaattccattcccatggttagtgtttaatgaaaaggtgaaagtg
aattcagtattccttagggattcaactggtatatctgattcagtgcttctcttatttggt
gggaatgtatccagaggtggactagatggtcacctgaaaatgttgggagggtatttggag
tttttcatgaaaccagaattagccaagacttacttgagcttaaagatgggactggaagaa
ctgatacagaaaaaacttttggatcccatgttggaaacacaatcgcatagtgaacttctt
tcagctgttagattgttggtatcagaggaccattgtgatgggagatttgtctttggtcgc
caggtcctaccacaatcaaagaaggaaacaaactccaaaactggtggtgtagctgaggag
aaaaattataaaaatcaccttcaagcattccttaacagggctggacatgattcaccaact
tacaaaacaaaggagctgaaaaacaaccaatttcgttctactgtcatattcaatgggttg
aattttgttggtcagccatgcagcagcaaaaagttagcagaaaaatctgctgctgctgag
gctcttctatggttaaaaggggatagccattcgtctgatgatattgaccatgcatcagtg
cttttgaaaaagagcaacaagaaaagtaggaaaaattcgtttagcagtgctaaatggagt
tga
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