Glycine max (soybean): 100806161
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Entry
100806161 CDS
T01710
Name
(RefSeq) formamidopyrimidine-DNA glycosylase isoform X2
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
gmx
Glycine max (soybean)
Pathway
gmx03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
100806161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gmx03400
]
100806161
Enzymes [BR:
gmx01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
100806161
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
100806161
DNA repair and recombination proteins [BR:
gmx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
100806161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
Fpg-like_C
NFACT_N
Ribosomal_S13
Phage_int_SAM_5
Motif
Other DBs
NCBI-GeneID:
100806161
NCBI-ProteinID:
XP_003542122
UniProt:
I1M5V4
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All DBs
Position
13:complement(44603574..44608749)
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AA seq
399 aa
AA seq
DB search
MPELPEVEAARRAVEYNCVGKRITKCVVADDSKVIHGVSPSDFQASVLGKLIVAAHRKGK
NMWLQLDSPPFPSFQFGMAGAIYIKGAAVTNYKRSAVKDEDEWPSKYSKIFIELDDGLEL
SFTDKRRFAKVRLLKDPTSVPPISELGPDALFEPMTLEKFTESLHKKKTEIKALLLDQSF
ISGIGNWVADEVLYQARIHPRQVASSLSNESCSNLSKCIKEVIEKAIEVGAESSQYPTNW
IFHSREKKPGKAFVDGKKIDFITAGGRTTAYVPELQKLSGSLDVKETGKPNKRQASKKVR
VDDDTEKPTNGEVDDLGSVKSKKGTKAGAKGRKPSKKKKSGGSDEDKDSSDVGTDYDSDQ
VEKKNPGNVASRKQAGGEKQSNRRVQSNQTSWSAKRKAK
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgccggagcttccagaggtagaggcggcgaggagggccgttgagtataactgcgtcgga
aagaggataacaaagtgcgttgtcgccgatgattctaaggtgatccatggtgtctctccc
tccgacttccaagcttccgtcctcggcaagctcatcgtcgctgctcaccgtaagggaaag
aacatgtggcttcaacttgattctcctccttttccttccttccaattcggtatggctggt
gctatatacattaaaggagctgcagtaacaaactataaaaggtctgctgtaaaagacgag
gatgagtggccctcaaaatattcaaaaattttcattgagttagatgatggtttggagttg
tctttcactgacaaaaggcgatttgctaaagttcgtctgctcaaagatccgacatcagtg
cctcccatatccgagcttggtcctgatgcacttttcgaacctatgacacttgagaagttt
acggagtctttgcacaagaagaaaactgaaatcaaggctttattacttgatcaaagcttt
atttcaggtattggaaattgggtggcagatgaagtgttataccaagcaagaattcatccg
cggcaggtggcttctagcctgtctaatgaaagctgctcaaatttgagcaagtgcattaaa
gaggtcattgaaaaagcaattgaagttggagcagaaagtagtcagtatcccaccaattgg
atatttcattcacgtgaaaagaagcccggcaaggcttttgttgatgggaaaaaaattgac
ttcatcacagctggtggcaggacaactgcttacgtgccagagttgcaaaagctaagtgga
tctctagatgtaaaagaaactggtaagcctaataaaaggcaagcctcaaagaaagtaagg
gtagatgatgacactgaaaaaccaacaaatggggaagtggacgatttgggaagtgtcaaa
tcaaagaaggggacaaaggctggagctaaaggtaggaagccttcaaaaaagaaaaagtca
gggggaagtgatgaagacaaagatagtagtgatgttggtactgattatgatagtgatcaa
gttgaaaagaagaatccaggcaacgtggctagtaggaaacaagctgggggagagaagcaa
tcaaacaggagagttcaaagcaatcaaactagttggagtgctaaaaggaaagctaagtaa
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