| Entry |
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| Name |
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
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| KO |
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| Organism |
gmx Glycine max (soybean)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:gmx00001]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100806384
09124 Replication and repair
03420 Nucleotide excision repair
100806384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:gmx03021]
100806384
03036 Chromosome and associated proteins [BR:gmx03036]
100806384
03400 DNA repair and recombination proteins [BR:gmx03400]
100806384
Enzymes [BR:gmx01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100806384
Transcription machinery [BR:gmx03021]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
100806384
Chromosome and associated proteins [BR:gmx03036]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
100806384
DNA repair and recombination proteins [BR:gmx03400]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
100806384
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
16:32945587..32952774
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| AA seq |
758 aa
MKFEIEDITVYFPYDNIYPEQYSYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV
LSKPHSPLKLLYCTRTVHEMEKTLAELRLLHDYQLRHLGPAAKILALGLSSRKNLCVNPR
VLAAENRDSVDAGCRKLTASWVRAVAAENPGVPTCEFFEQYERAGSSAVLPPGVYTLQDL
RVYGKEKGWCPYYLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID
NVCIEALSVSVRRQTIEGARRNLNRMRQEIDKFKATDAGRLRAEYNRLVEGLALRGDLPA
TDAWLANPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTENVEKESPVSFVVS
ILNHAGIDQKALKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP
FDERMPHIPDPVLQLCCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMASVVPDGIVCFFV
SYSYMDGIVNTWNENGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAIFFSVA
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPSWILSHLHDAHLNLSTDMALHIAREF
LRKMAQPYDKTGGTGRKTLLSQEDLEKMAVSGLDDMMY |
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| NT seq |
2277 nt +upstreamnt +downstreamnt
atgaagttcgagatagaggacataaccgtgtacttcccctacgacaacatctacccggag
caatactcctacatggtagaactcaagcgcgccctcgacgccaagggccactgcctccta
gaaatgcccaccggcacggggaaaaccatcgcactcctctccttgatcacaagctacgtt
ctttccaaaccccattcccccctcaagctcctctactgcacccgcaccgtccacgagatg
gagaagacgctcgccgagctccgcctcctccacgactaccagctccgccaccttggcccc
gccgccaagatcctcgcccttggcctgtcgtccaggaagaatctctgcgttaatccgcgg
gttctcgccgcggagaatcgcgactccgtggacgctggatgccggaagctgaccgcgtcg
tgggtccgggcggtggccgcggagaaccctggcgtgccgacgtgtgagttctttgagcag
tatgagcgggcggggtcgtccgcggttctgcctcccggggtttatacattgcaggacttg
agagtatatgggaaggagaaggggtggtgcccatactatttggcacgacatatggtgcag
tttgccaacgtggtggtgtatagctatcagtatttgcttgatccaaaggtggctggcata
atatctaaggaaatgcagaaagagtcagttgttgtgtttgatgaagctcataatattgat
aatgtctgtattgaagcgcttagtgtgagtgtgaggaggcagactattgaaggtgctaga
agaaatcttaataggatgcgtcaggaaattgacaagttcaaggccactgatgcaggtaga
ctccgtgctgaatacaacaggcttgtcgaaggtttggcactaagaggagacctgcctgct
actgatgcctggcttgcaaatccggccttgcctgatgatatactaaaggaggctgtacct
ggaaatattcgccgggctgagcattttattcatgttttgcgtagattagttcaatacctt
gaagggcgcttggatactgagaatgtggagaaggagagccctgttagctttgttgtttct
attcttaaccatgccggaattgaccaaaaagcactaaagttctgttatgatcgccttcat
tctttgatgatgacattggaaattacagacaccgatgagttccttcatatccaaactata
tgtgattttgccacccttgtaggaacatatgctcgtggtttttctattataattgaacct
tttgatgagcgaatgccacatattcctgatcctgtattacagctttgttgccatgatgct
tctcttgctatcaagccagtttttgagcgatttcagtctgttgtgattacatctggcaca
ctaagcccaatagatttgtaccctcgtcttttgaatttcaatcctgttgtcagtagaagt
tttactatgtccttaacaagagattgcatatgtcctatggtgcttacccgtggcagtgat
cagcttccagtcagtacgaaatttgatatgagaagtgatctgggtgtggtaaggaattat
ggaagactcttgttggaaatggcttcagttgttccggatgggattgtatgtttctttgtt
agttactcatatatggatgggatagtcaatacttggaatgaaaatggaattttaaaggaa
ataatgcaacataaacttgtctttattgagactcaggatgtggtagagactacattggct
cttgataactatcgcaaggcttgtgattgtggaagaggtgctatctttttttctgttgct
aggggaaaggttgctgaaggtatagattttgatcgacattatggccgactagtaatcatg
tttggtgttccttttcaatacacattaagcaagattttgcttgcacgtctggaatatcta
cgggatacttttcaaattaaggaaggagattttctgacttttgatgcattgagacaagct
gctcaatgtgtgggtcgtgtaatccgttcaaaggctgattatggaatgatgatttttgca
gacaaaaggtatagtcgccatgacaaacgttcaaaattgcctagttggatactatctcac
ttacatgatgcccacctgaacttgagcacagacatggctttgcatatagcacgtgagttc
ctcaggaaaatggcccagccttatgataaaaccggtggcactggcaggaaaaccttgttg
tcccaggaagacttggagaagatggctgtcagtggcttggatgatatgatgtattga |
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