Glycine max (soybean): 100807162
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Entry
100807162 CDS
T01710
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
gmx
Glycine max (soybean)
Pathway
gmx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100807162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gmx03041
]
100807162
03009 Ribosome biogenesis [BR:
gmx03009
]
100807162
Enzymes [BR:
gmx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100807162
Spliceosome [BR:
gmx03041
]
Complex A
U2 snRNP components
U2 related factors
100807162
Complex B
100807162
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
100807162
Ribosome biogenesis [BR:
gmx03009
]
Eukaryotic type
90S particles
Helicases
100807162
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
nSTAND3
SRP54
ABC_tran
FtsK_SpoIIIE
T2SSE
AAA_30
AAA_7
Flavi_DEAD
AAA_33
Fructosamin_kin
NACHT
AAA_29
PhoH
Motif
Other DBs
NCBI-GeneID:
100807162
NCBI-ProteinID:
XP_003521600
UniProt:
I1JQU1
LinkDB
All DBs
Position
3:43599571..43603347
Genome browser
AA seq
720 aa
AA seq
DB search
MGTERKRKVSLFDVVDDSAAKMAKTNGGAANNLINHWTSRPYSQRYFEILEKRKTLPVWH
QKEEFLQVLKDNQTLILVGETGSGKTTQIPQFVLDAVELETPDKRKKMMIACTQPRRVAA
MSVSRRVAEEMDVTIGEEVGYSIRFEDCSSAKTVLKYLTDGMLLREAMTDPLLERYKVII
LDEAHERTLATDVLFGLLKEVLKNRPDMKLVVMSATLEAEKFQGYFFGAPLMKVPGRLHP
VEIFYTQEPERDYLEAGIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKITKEISNLGDQ
VGPVKVVPLYSTLPPAMQQKIFEPAPPPLKEGGPPGRKIVVSTNIAETSLTIDGIVYVID
PGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQT
YPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTKL
GEIMSEFPLDPQMSKMLVVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKAADEAKARFG
HIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMSRFNLKLCST
DFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNE
YVLTSRNFIRTVTDIRGEWLVDVAPHYYDLSNFPQCEAKRVLERLYKKREKEKEEARSRR
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagagaaagaggaaggtgagcttgttcgatgtggtagacgattccgcggca
aagatggcgaaaaccaatggcggcgctgctaataatctcatcaatcactggacctcaagg
ccttactcccaaaggtacttcgagattctggagaagagaaagaccctccccgtttggcac
cagaaagaagagtttttgcaggttctcaaagataaccagactttgattctcgtcggtgaa
actggtagtggcaaaactacgcagattcctcagtttgttttggatgctgtcgaattagag
acaccggataaacgtaagaagatgatgatagcgtgcactcagcctcggagagtggctgca
atgtctgtttcgcgtcgtgtggccgaagagatggatgtaactattggggaagaggttggt
tacagtatcagatttgaagactgcagtagtgcaaagacggttttgaagtatctaacggat
ggtatgctcttaagagaagctatgacggatccacttttggaacggtacaaggttattatt
cttgacgaggcacatgagaggactttagccacggatgtgctatttggtcttctgaaggaa
gtgcttaaaaatagacctgatatgaagttggttgttatgagtgcgactcttgaagctgaa
aagtttcagggctattttttcggtgcccctctcatgaaagttcctggaaggctacatcct
gttgaaattttctatactcaggaacctgaaagggattacttggaggctggcattaggaca
gtggtacagatacacatgtgtgagcctccaggagatatacttgtatttttgactggagag
gaagagatagaagatgcttgccgcaaaataacaaaagaaatttctaatctgggagatcag
gtgggccctgttaaagttgtacccctgtattctacacttcctcctgctatgcagcagaag
atttttgagccagctccacctccactgaaggagggtggacctcctggaaggaagattgtg
gtatcaacgaacatagcagaaacgtccttgacaattgatggtattgtttatgtcattgac
cccggttttgctaagcagaaggtttataacccacgagttcgtgtggagtctttattagtg
tcaccaatatcgaaagctagtgcacatcagagatcagggcgtgctggaagaactcaacca
gggaagtgctttagactttacactgagaaaagtttcaataatgatctacagccacagacc
tatcctgaaattttgagatcaaatcttgccaacacagttcttactttgaagaaactgggt
atagacgatttagtgcattttgatttcatggaccctcctgctcctgagaccttaatgcgt
gcattggaagtgttgaattacttgggtgcactggatgacgatggtaacttaacaaaactg
ggtgagattatgagtgaatttcccttggacccacagatgtcaaagatgctcgttgtcagt
cctgaattcaactgttcaaatgagattctgtccgtttctgccatgctttcagtacccaat
tgctttgtccggcctagggaggcacaaaaagctgcggatgaagctaaagctaggttcggg
cacattgatggagatcatctcacactgttgaatgtctatcatgcgtacaagcaaaataat
gaggatccctcttggtgctacgataactttgttaatcatagggcattgaaatcagctgat
aatgttagacaacaattagtgcgtatcatgtcccggtttaatctgaagctatgcagcact
gactttaatagccgcgactactatgtcaacataagaaaagctatgctagctgggtatttc
atgcaggtagctcatctggagcgtacaggacactacttgacagtgaaagacaaccaggtg
gtgcatttgcatccatccaattgcctggatcacaagcctgaatgggtcatttataatgaa
tatgttcttaccagtcggaattttattcgtactgttacagacatacgtggggaatggttg
gttgatgtagcaccacattactatgatttgtctaatttcccccaatgcgaggcaaagcgt
gtcctcgagagactttacaagaagcgagaaaaggaaaaggaggaagccaggagccgcaga
tga
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