Glycine max (soybean): 100807857
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Entry
100807857 CDS
T01710
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
gmx
Glycine max (soybean)
Pathway
gmx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100807857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmx03021
]
100807857
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100807857
Transcription machinery [BR:
gmx03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100807857
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100807857
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
100807857
NCBI-ProteinID:
XP_006588826
UniProt:
K7LHS7
LinkDB
All DBs
Position
10:6380946..6388352
Genome browser
AA seq
975 aa
AA seq
DB search
MENSRRPFDRSREPGPKKPRLMEELDRASNSGARQFHQRQVASGITTLSSARFRTNDRDL
ESSDFGRRGGAGGGGGGYQPQPLPFQELVAQYKAALAELTFNSKPIITNLTIIAGENQAA
EKAIAATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFIKAYRQVDPS
VHQSMRHLFGTWKGVFPPQTLQVIEKELGFTPAVNGSSSASATLRSDSQSQRPPHSIHVN
PKYLERQRLQQSSRTKGVVDDITGAISNTNDDPEMPGRTLGVGRPWVDPSVTVNIHSREN
EQCAHRGAFNDSVLEKSIGASYGSNEYGSNISRNLGLGIRRPGGRVTESGHDKSWYSKSG
VVAGTMSGQGNGLGLKYSFLNTEAPKSMILDVHHQPTQNISSTRTSVISASWKNSEEEEY
TWDEMNSGLTVHGASTVSNLSKNSWTADDENLEAEDCLEIRNPFRANVDREMSIESQATE
KKQLPSSHHHPSLSWQLQEQQSIDELNRKAGHSDRFVSTHGAIPANANSSAARMVNQPFL
SNATIGLPGIAGQFHSLGAENPSGQSPLQQRSPSPPGPFSSTTFQARHQHQLGSSHNEVT
VKTEKPPMSEVPLARETKSNLDTGNLPSRLGVRPSRSGGPSPATLISSVSKIASPSSLGP
SSDNVSVLPKIPLRKAGPPRASTLPPASSNVSSASAQTSSDTNNTLNPIANLLSSLVAKG
LISAETESPAKVPSELLTRLEEQSDSITTTSSLPVASVSGSATVPVPSTKDEVDDTARTP
ISLSESTSPGIRNLIGLEFKPDVIREFHSSVVSGLFDNFPHQCSICGHKLRFQEQFNRHL
KWHATRESEENGLISASRWYLKSNDWILGKAEYPSENEFTDSVDTYGKEADKSQEDAMVL
ADEKQCLCVLCGELFEDFYCQETGEWMFKGAVYLANSDSKSEMGIRDVSTGRGPIIHASC
LSDNSVSSVLETGQD
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggagaattcgcgtagaccgttcgatagatcgcgagaaccgggtccgaagaagccccgg
ttgatggaagagctggatcgggcttcgaattcgggtgcccgacagtttcatcagcgacaa
gtggcttctgggatcaccacgttgtcgtctgcaaggtttagaacaaacgacagagatctt
gaaagcagtgattttggtcgccggggcggtgccggtggcggtggcggcggttatcagccg
cagccactgccatttcaggagcttgtggctcagtataaggcagctcttgcagaacttact
ttcaactcgaaaccgataattaccaacttgactatcattgcaggggagaatcaagctgcg
gagaaggccattgcagccactgtttgtgctaacattctagaggttcctagtgatcaaaag
ctgccatcactttatctcttagacagtattgttaagaatattgggcgggattatataaaa
tactttgctgccaggctacctgaggtattcatcaaagcatacagacaggttgatccttct
gtccatcaaagtatgaggcatctttttggaacttggaaaggagtctttcctcctcagacc
cttcaggttattgagaaggaattgggcttcactcctgcagtcaatggctcatcttctgct
tctgctacactcaggagtgattcacagtcacaacgtccacctcatagtatccatgtgaat
cccaaatacttagaaagacagcgtctacagcagtccagcaggactaaaggagttgttgat
gatatcactggagcgatttcaaatacaaatgatgacccagagatgcctggtagaactttg
ggcgttggacgaccatgggtggatcctagtgttactgttaacatccattcacgtgaaaat
gagcaatgcgctcacagaggtgcattcaatgattctgttctggaaaagagcattggtgca
tcctatggaagcaatgaatatggttccaatatttcaaggaatttgggcttgggtatccgc
cgacctggtggtagggtgactgagtcaggacatgacaaaagttggtacagcaaatctggt
gtcgttgcagggaccatgtctgggcaaggaaatggtttaggtcttaagtatagttttttg
aatactgaagcaccaaagtccatgattttggatgtgcatcatcagcctacacagaacata
agtagcacacgtaccagtgtgatctctgcgagctggaaaaattctgaggaagaggagtac
acatgggatgagatgaactctggcctgactgttcatggtgcatccactgttagcaacttg
agcaaaaatagttggactgctgatgatgagaatttggaagctgaagattgcctcgaaatc
agaaatccttttcgggctaatgttgatagagaaatgtccattgaatctcaagccactgaa
aagaaacaattaccttcatctcatcatcatccatcactatcatggcaattgcaggagcag
caatctattgatgaattgaatcggaaggcaggtcactcggacagatttgtgtccacacat
ggtgccataccagccaatgcaaattcttctgctgccaggatggtcaatcagcctttcctg
tcaaatgcaacaataggattgccaggaattgcaggccaatttcattctttgggagctgaa
aacccttcagggcagtcacctttacaacaaaggtctccgtcaccgccaggtccattctct
tcaacgacttttcaggcaaggcatcagcaccaactgggctcttctcacaatgaagttact
gttaagactgagaagccacccatgtccgaagtgcctttagccagagaaactaaaagtaat
ctggatacagggaatcttccatctcggttaggggttcggccttcacggtcaggtggccct
tcccctgccacattaatttcttcagtgtccaaaattgcatcaccatcttcgttaggtcct
tccagcgataatgtatctgttcttccaaaaatacctctaagaaaggctggaccacctagg
gcatctactctaccaccagcttcctctaatgtcagcagtgcctcagcccagacatcaagt
gataccaataataccttaaatccaattgcaaaccttttaagctctttagttgcaaaaggt
ttgatatctgcagaaacagagtcaccagctaaggtgccttcagagttgcttactcgattg
gaagaacaaagcgatagcattaccaccactagctctttgcctgtggcttcagtgtctggt
tctgccactgtccctgttccttctaccaaggatgaggtagacgacactgcaagaacgcct
atatcattgtctgaatcaaccagcccaggaatcagaaatctcattggcttagagtttaag
cctgatgtaattcgagaattccattcatctgtagttagtggattatttgataattttcca
catcagtgcagcatatgtggccataagcttagattccaagaacagttcaatagacacttg
aagtggcatgccacaagagaaagcgaagaaaatggtttaattagtgcatctagatggtat
ctgaagtcaaatgattggattcttggcaaggctgagtatccatctgagaatgagtttact
gattctgtagatacatatggcaaagaagcagacaaaagtcaagaggatgctatggttcta
gcagatgaaaaacaatgcttgtgtgtgttgtgtggtgagctatttgaagatttttactgt
caggaaactggtgagtggatgttcaaaggggctgtttacctggccaactctgatagcaaa
agtgagatgggaattagagatgtgagtactggaaggggtcctatcattcatgcaagttgc
ttatcagataactcagtttccagtgtcctcgagacgggacaggattaa
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