Glycine max (soybean): 100808877
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Entry
100808877 CDS
T01710
Name
(RefSeq) polyadenylate-binding protein 2
KO
K13126
polyadenylate-binding protein
Organism
gmx
Glycine max (soybean)
Pathway
gmx03015
mRNA surveillance pathway
gmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100808877
09123 Folding, sorting and degradation
03018 RNA degradation
100808877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100808877
03041 Spliceosome [BR:
gmx03041
]
100808877
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100808877
mRNA cycle factors
Stress granule specific factors
100808877
Spliceosome [BR:
gmx03041
]
Complex C
Other components
Complex C specific factors
100808877
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_7
RRM_3
RRM_occluded
Cas6
Motif
Other DBs
NCBI-GeneID:
100808877
NCBI-ProteinID:
XP_006599461
UniProt:
I1MP18
LinkDB
All DBs
Position
16:32196873..32202396
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AA seq
666 aa
AA seq
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MAAAMISAPAVAMRVVVPALNGVQSGNASLYVGDLERNVDEAQLFELFGQVGQVVSIRVC
RDLTMRSLGYAYVNFVNPQDAANAMEHLNFTPLNGKSIRVMFSNRDPSIRKSGYANVFIK
NLDISIDNKALHDTFSAFGFVLSSKVAVDNNGQSKGYGFVQFDNEESAQNAIKKLNGMLI
NDKKVYVGLFVRRQARAQVNESPKFTNVYVKNFSETYTDEDLKQLFSTYGPITSVVVMKD
TDGKSRCFGFVNFESPDSAVAAIERLNGTAVNDDKVLYVGRAQRKAEREAELKARFERER
MRKYEKLQGANLYVKNLDYSINEENLKELFSKFGTITSCKVMLEPNGHSKGYGFVAFSTP
EEGNKALNEMNGKMIGRMPLYVAVAQRKEERKALLQAQFSQMQALGAITPFHGGIPGYHP
GAPSLSPQQLYFGQGPNGLVPPQPTGYGFQQQLLPNIHPGVAPNFFMPYHPQRQAPPSQR
RDPRRFGNLQQVHHNQMLHPNSNQGFRYMENGRNGMDPSVIPHGMGGPMMPLPFDGSGIS
AVHTYNQYHAGASSNTLASALASATPENQHLMLGEHLYPLVDGLTANHQQTAKVTGMLLE
MDQSEVIHLMESPEDLKIKVSEAMLALREAAPGSEEVAGSEEVGGSEEVGGSEEVGDQLG
SLSLNE
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgcaatgatttctgctccggcggtggcaatgagggtggtggttccagctttg
aacggtgtgcaatccgggaatgcctctttgtacgttggtgatcttgagaggaacgttgat
gaggcgcaactgtttgaactgtttggccaagtaggccaagtggtttcaattagggtttgt
agggatctcacaatgcgatctcttggatatgcttacgttaactttgtcaacccccaagat
gctgctaatgccatggaacatctgaatttcactcctttgaatggaaaatccatccgtgtt
atgttttctaaccgagatcctagcattcgaaaaagtggatatgcaaatgtgtttatcaag
aaccttgacatatcaatagataacaaggcattacatgacactttttctgcctttggattt
gtactctctagtaaggtagccgttgataacaatggtcaatcgaaagggtatggatttgtg
cagtttgacaatgaagagtctgcacaaaatgctatcaaaaagttgaatggcatgttgata
aatgataaaaaagtctatgttggactctttgttaggcgccaagcaagggctcaagtaaat
gaatcaccaaagttcactaatgtgtatgtgaaaaacttttctgaaacatatactgatgaa
gatcttaagcagctctttagcacctatggtccaataaccagtgttgtggtcatgaaagac
acagatgggaagtctagatgttttggttttgtgaattttgaaagtccagattcagcagtt
gctgccattgaaaggttaaacggaaccgcagtcaatgatgataaggttttatatgtaggt
agggctcagcgcaaagccgaaagagaggcagaattgaaagctagatttgagcgggaaaga
atgagaaaatatgaaaaattacaaggtgctaatttgtacgtgaaaaatctcgattatagc
atcaatgaagaaaacttgaaggagttattttctaagtttggaacaataacatcttgcaag
gtgatgcttgaaccaaatgggcatagcaagggctatggttttgttgccttttcaactccc
gaggaaggaaataaagcattgaatgaaatgaatggaaagatgattggacgtatgcccctg
tatgtagctgtggcccaacgcaaagaagagaggaaggctcttttgcaggctcaattttct
caaatgcaagccctaggtgcaattacaccttttcatgggggaatcccaggatatcatcca
ggggcaccaagcctttcccctcaacagttgtattttggtcaagggccaaatggtcttgta
ccacctcagccaacgggatatggtttccagcagcaactcctgccaaacattcatcctggt
gttgctccaaatttctttatgccataccacccacaaagacaggcccctccttcgcaaaga
agggatcctcgaagatttggaaatctccaacaggtgcaccataaccagatgttgcatcct
aactccaaccaagggtttagatacatggagaatggtcgaaatggaatggatccgtcagta
attccccatggtatggggggtccaatgatgccattgccctttgatggttctggaatttct
gcagttcatacttataatcaatatcatgctggtgcatcgtctaacacacttgcctcggct
ctagcttctgctaccccagaaaatcagcacctgatgctaggtgaacatttatacccactt
gtggatggacttactgcaaatcaccagcagactgcaaaggtgacaggaatgttgttggaa
atggaccagtcagaggtcatccatctgatggagtctcccgaggacttgaaaataaaggtg
tctgaggcaatgctggcccttcgtgaagctgcaccaggttctgaagaagttgctggttct
gaagaagttggcggttctgaagaagttggtggttctgaagaagttggtgatcaacttggc
tcactatcattgaatgaatga
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