Glycine max (soybean): 100808957
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Entry
100808957 CDS
T01710
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
gmx
Glycine max (soybean)
Pathway
gmx03013
Nucleocytoplasmic transport
gmx03015
mRNA surveillance pathway
gmx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100808957
09122 Translation
03013 Nucleocytoplasmic transport
100808957
03015 mRNA surveillance pathway
100808957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100808957
03041 Spliceosome [BR:
gmx03041
]
100808957
Enzymes [BR:
gmx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100808957
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100808957
Spliceosome [BR:
gmx03041
]
Complex C
Other components
EJC/TREX
100808957
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100808957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
100808957
NCBI-ProteinID:
XP_003522620
UniProt:
I1JUD5
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All DBs
Position
4:5624990..5629932
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AA seq
427 aa
AA seq
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MGETKDEAYEEELLDYEEEDDKAPDSAGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVL
CHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILAL
TRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaaactaaggacgaagcatacgaggaagagcttctcgattacgaggaggaagac
gacaaggcccccgactccgccggagctaaagtcaacggcgaagctaccaagaagggctat
gttggaattcacagttcgggatttagggacttccttctgaagccagagcttcttcgggct
attgtggactcgggatttgagcatccatctgaagtgcaacatgagtgcatacctcaagca
attctcgggatggatgtaatttgtcaagcaaaatctgggatgggaaagactgctgttttt
gttctgtcgactctgcagcagattgatcctgttcctggccaagtttctgcacttgttctt
tgtcatacaagagaattagcataccagatatgccatgagttcgagaggtttagcacctac
ttgccagatctcaaggttgctgtcttttatggtggggtcaacatcaaagttcacaaggat
ctgctgaaaaatgagtgccctcatattgttgttggaacaccgggaagaatactggcattg
accagggataaggacctttctttaaagaatgttagacatttcatattggatgaatgcgac
aagatgctggaatcattggatatgaggaaagatgttcaagacattttcaagatgactccc
catgataagcaagttatgatgttctcagcaacactcagcaaggaaattcgcccagtctgc
aagaaatttatgcaagatcctatggaaatttatgttgatgatgaggccaagttgacactt
cacgggcttgtgcagcactacatcaaattgaaagaggaggaaaagaatcggaagttgaat
gatcttcttgatgcactggactttaatcaagttgtgatcttcgtgaaaagtgttagcaga
gcagctgagctggacaaactacttgtggagtgcaactttccatctatatgcattcactct
ggcatgtcccaggaagaaaggttaaagcgctataaaggtttcaaggaggggcatacaagg
attcttgttgcaacagatttggttggaagagggattgatattgaacgtgtcaacattgtt
ataaactatgacatgcctgattccgcagacacatacttgcacagggttggtcgagctgga
agatttggcaccaaaggccttgcaatcacatttgtttcttgttctactgatgtcgatgtt
ctcaacaatgttcagtctaggtttgaggtggatataaagcagcttcctgagcagattgat
acctctacctatatgccatcgtag
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