Glycine max (soybean): 100809908
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Entry
100809908 CDS
T01710
Name
(RefSeq) cleavage stimulation factor subunit 50
KO
K14406
cleavage stimulation factor subunit 1
Organism
gmx
Glycine max (soybean)
Pathway
gmx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100809908
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100809908
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
100809908
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EML
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
Beta-prop_WDR75_1st
Cytochrom_D1
Beta-prop_NWD2_C
Ge1_WD40
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_VPS8
Beta-prop_NOL10_N
Beta-prop_IFT140_1st
KNTC1_N
Motif
Other DBs
NCBI-GeneID:
100809908
NCBI-ProteinID:
XP_003528235
UniProt:
I1KD31
LinkDB
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Position
6:complement(19186778..19191777)
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AA seq
425 aa
AA seq
DB search
MDNSSSEQTVQDGKLYRNLNSLIVAHLRDNSLTQAASAVASATMTPLNVEAPPNRLLDLV
AKGLAVEKGDITRGTGFTATLPLPHTTAIDFSSVPDVKGSSKSFPKHETRHLSEHKNIAR
CARFSADGRFVATGSADTSIKLFEVSKIKQMLLPEAKDGPVRPVIRTYYDHIQPINDLDF
HPQGTILISGAKDQTIKFFDISKTNAKRAYRVIQDTHNVRSVSFHPSGDFLLAGTDHAIP
HLYDINTFQCYLSANIPETSPSGAINQIRYSCTGSMYVTASKDGAIRLWDGITANCVRSI
TAAHGTAEATSAIFTKDQRFVLSCGKDSTLKLWEVGSGRLVKQYLGAIHTQLRCQAIFNE
TEEFILSIDELSNEIVIWDAMTTEKVAKWPSNHVGAPRWLEHSPIESAFISCGTDRSVRF
WKETV
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggataacagtagctcagaacagaccgtgcaagatggcaaactctacagaaacctcaat
tctctcatcgtcgctcatcttcgcgacaacagtctcactcaggctgcaagtgctgttgct
tcagcaaccatgactccactgaatgtagaagcccctcctaacaggcttctcgacctggtc
gctaagggtcttgcagtggaaaagggcgacatcacaagaggcactggtttcactgctaca
ctgcctctgcctcacacaacagctattgatttcagctctgtgcctgatgtgaaaggttca
tcaaagagcttcccaaagcatgaaacgcgacacctttcagaacacaagaatattgccaga
tgtgctaggtttagtgctgatggaagatttgttgccactggaagtgcagatacatcaata
aagttatttgaggtttcgaagatcaagcagatgttgctgccagaggcaaaggatggtcct
gtgcggcctgtcatacgaacatattatgatcatatacaaccaataaatgatctggatttt
catccacaaggtactatcctgatatctggagctaaagatcaaacaataaagttttttgat
atttcaaaaacaaatgcaaagagagcatacagggttatccaggacacacacaatgttcga
tctgtatcttttcatccatctggagactttctgctggcaggaactgatcatgcaattcca
catttgtatgatataaatacctttcagtgctatctgtcggcaaatatcccagagactagc
cccagtggagccataaaccagatcagatattcttgtacaggttccatgtatgttacagca
tctaaagatggtgctattcggttgtgggatggcatcactgccaattgtgtgcgctcaata
actgcagcacatggaacagctgaggctaccagtgcaatttttacaaaagatcaaaggttt
gttctctcttgcgggaaggattctaccttaaagctttgggaagttggctctggaagatta
gtcaaacaatatctgggtgctatacatacccagctaaggtgccaggctatttttaatgag
acagaagaatttattctatccatagatgaactgagcaatgagatcgttatctgggatgcg
atgacaacagaaaaagtagcaaagtggccttctaatcatgttggtgcaccccgctggctt
gaacactcaccaatagagtctgcttttatttcctgtggaactgataggtcagttcggttc
tggaaggaaactgtataa
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