Glycine max (soybean): 100811629
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Entry
100811629 CDS
T01710
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
gmx
Glycine max (soybean)
Pathway
gmx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100811629
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmx03021
]
100811629
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100811629
Transcription machinery [BR:
gmx03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100811629
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100811629
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Motif
Other DBs
NCBI-GeneID:
100811629
NCBI-ProteinID:
NP_001358686
UniProt:
I1NAJ5
LinkDB
All DBs
Position
19:45357404..45364103
Genome browser
AA seq
1030 aa
AA seq
DB search
MNMERSLDRSREPGPKKPRLIEELNARQLPQRPTAVTTLPSTRFRAYGRDSEISDLGRGG
GGGYQPQPPPHQELVTQYKTALAELTFNSKPIITNLTIIAGENLSAAKAIAAAVYDNILE
VPSDQKLPSLYLLDSIVKNIGRDYIKYFAYRLPEVFCKAYKQVDPCVHSSMQHLFGTWKG
VFPPQSLQMIEKELGFAPAVNSSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQQSSR
SKGVVNDMTGAVLNSNEDSERPDRALSAARPWLDPRINMLNNQHTHRDVFNDSVPEKSMD
GSSYGGSEYSSVISSNLVSGAGRTGSKLIDLGHDKTWFKTDGGDPDTTSGQRNGFNLKRS
YSNREAPKLTNLDAHRQPRQSTTDIRNNLMSGNWKTSEEEEFMWGEMNIGLTDHGANVSS
NLSTDTWMADDENLEGEDHLQITRPFGAKVDREISTAKKQPPGFGGHPPSSWQLQKHHSI
DKLNLKPGYSEGFVSTLSGLPANPSSLAVKKGNQSFTSNAVVGMAKFVGQQFDSGETESP
SGQSPLRQQSPSLPGAVHHTHSMQNFADQELPQNLKTSRFLGGPISQHIRDRSPTGHPIV
QVGNLRRSQERDMHGPLSSMTSFRPKLQQKQLNPSQTEVTAKTKLPQSKVSLTRETSEQL
STNNLSAVPVKSGIIPKKSISSNLDSREDPSQTGVQPTQSGRPTTLISSGSAVASPSSLD
PLHNDSSTLPKKPQGKAGQPPQRLSTQPPASSSVSSSSAPTLNAAKNNKLNPIANLLSSL
VAKGLISAETESPTTVPSEAPKGSKDQTEIITTSCSLPVTSISGSAAIPVSSSGDKVDAA
TKISHASPQSTSTEIRNLIGFDFRPNVIREFHPSVIRELWDDFPHNCKVCGIKLKQELFN
RHLEWHAAREHGPIKASRSWYAKSIDWIAGRTEYSSESEFTDSVDLQDKKIDSSQLDTMV
LADENQCLCVLCGELFEDVCCHDRNEWMFKGAVYMNFSDVNCEMESRNVGPIIHAKCLSE
NSVITNSDND
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgaacatggagagatcgttggacagatcgagagaacctggtcccaagaagcctcgattg
atcgaggaactcaacgcccgacagttacctcaacgccctacggcagttactacgttgccg
tctacgaggtttcgagcatatggcagagactccgaaatcagcgatttgggtcgtggcggt
ggcggcgggtaccagccgcagcctccgccgcaccaagagcttgtgactcagtacaagact
gcgcttgctgagctcactttcaattcgaagccgataattaccaacttgactattattgcc
ggagagaacctttctgctgccaaggcaattgctgctgctgtttatgataatattctagag
gttccaagtgatcaaaaactgccatctctttatctcttagacagtattgttaagaatatc
ggacgggattatataaaatattttgcttacagactacctgaggtattctgcaaggcttac
aaacaggttgatccttgtgttcattcaagtatgcaacatctttttggaacttggaaagga
gtctttcctcctcagtcccttcagatgattgagaaggaacttggctttgcacctgcagtc
aatagttcagcttcagtatctgctacagtcagaagtgatttgcagtcacaacgcccacct
catagtatccatgtgaatcccaagtatttagaaaggcagcgtcttcagcagtcaagtagg
agtaaaggggtagttaatgatatgactggagctgttttaaactcaaatgaggattcggag
aggccagatagagctttgagtgctgcacgaccatggctggatcctaggattaacatgctt
aataatcagcacacacatagagatgtatttaatgattctgttcctgaaaagagcatggat
gggtcatcatacggaggcagtgaatatagttctgtcatttcaagtaatttggtctcaggg
gctggaagaactggaagtaagctcattgatttaggacatgacaaaacatggttcaaaaca
gatggtggtgatccagatactacatctgggcaaagaaatggtttcaatctcaagcgtagt
tattcaaatcgtgaagcaccaaagctcacgaatttggatgcacatcgtcagccaagacaa
agcacaactgacatacggaacaatttgatgtcaggtaactggaaaacttctgaagaagag
gagttcatgtggggtgagatgaacattggtttgactgatcatggagccaatgtatcaagc
aatttgagcacagacacatggatggcagatgatgagaatttggaaggtgaagatcacctc
caaatcacacgcccttttggagcaaaggtcgatagagaaatatccactgctaagaaacaa
ccacctggttttgggggtcatccaccgtcatcctggcaattgcagaagcaccactcaatt
gataagttgaatctaaagccaggttactcagaaggatttgtgtcaactcttagtggatta
ccagccaacccaagttctttggctgtcaagaaggggaaccaatcctttacatcgaatgca
gtagtaggaatggccaaatttgtgggacaacaatttgattctggggaaactgaatcccct
tctgggcagtcacctttgcggcaacagtctccatcactgccaggagcagtacaccatact
cattcaatgcaaaattttgctgaccaagaattgccccagaatctcaaaacctctcgattt
ttgggaggtccgataagtcagcatattagagatcgctcacctaccggtcatccaattgtt
caggttggtaacttgcgaagatcacaggaaagggacatgcacggcccattatcttccatg
acttcttttcgaccaaagcttcagcaaaagcagctgaacccatctcagactgaagttact
gctaaaactaagctgccccagtctaaagtttctttaaccagagaaacttcagaacagttg
agcacaaataatttgtcagctgtacctgtcaagagtggaatcatccccaagaaatcaatt
tccagtaatctggattcaagggaggatccatctcagactggggttcaacctactcagtct
ggcaggcctaccacattaatttcttcagggtctgctgtggcatcaccatcttcattagat
cctctgcataatgattcatctactctgccaaaaaaacctcaaggaaaggctggacaacca
ccacaaaggctttctactcaaccacctgcttcctctagtgttagcagttcctcagctcca
accttaaatgctgccaaaaataataaattaaatccaattgcaaaccttttaagctcattg
gttgcaaagggcttgatatctgcagaaacagaatcaccaactacggtaccaagtgaagcg
ccgaagggatccaaagatcaaactgaaataattaccaccagttgttctttaccagttaca
tcaatttctggttctgcagctatcccagtatcatcttccggagataaggtagatgctgct
acaaaaatctctcatgcctcacctcaatcaactagcacggaaatcagaaatctcatcggc
tttgattttagacctaatgtaattcgagaattccacccatcagtaattagggaattatgg
gatgatttccctcataattgcaaagtttgtggtattaagcttaaacaagaactgtttaat
agacacttggagtggcatgccgcaagagaacatggtccaattaaggcatcaagaagttgg
tatgctaagtcaattgattggattgctggcaggacagaatattcatctgagtccgagttt
actgactctgttgatttacaagacaaaaaaatagacagcagtcaattggatacgatggtt
ctagcagatgaaaaccagtgtctgtgtgtattgtgtggcgagctatttgaagatgtgtgc
tgtcatgacaggaacgagtggatgttcaaaggggccgtttacatgaacttttcagatgtc
aattgtgagatggaaagtagaaatgtgggtcccatcattcatgccaaatgcttatcagag
aactcagtgatcaccaattcggataatgattaa
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