Glycine max (soybean): 100812450
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Entry
100812450 CDS
T01710
Name
(RefSeq) protein PAT1 homolog 1 isoform X2
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
gmx
Glycine max (soybean)
Pathway
gmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100812450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100812450
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100812450
mRNA degradation factors
5'-3' decay
Decapping complex
100812450
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
iPGM_N
Motif
Other DBs
NCBI-GeneID:
100812450
NCBI-ProteinID:
XP_003532940
UniProt:
I1KU43
LinkDB
All DBs
Position
8:complement(13746264..13754414)
Genome browser
AA seq
886 aa
AA seq
DB search
MLDMDGFGGGGGVGGAPNAENLRELGNVSSEGAVFDASQYAFFGKEAVQEVELGGLEDDG
CLPIVESNEEEFFFNREEAEDVKSLSDIDDLTTTFWKLNKVVSGPRSAGVIGERGSRENS
TSEWSQREDSINWYDQNAYDSEGSTDGKRWSSQPHSSLAHLHDSKPLYRTSSYPEQQRQE
QHYHLQHCSSEPVPNWFDQHIYDTETAHDHDGKRWSSQPHSSVAHLQESKPLYRTSSYPE
KQQELPRFSSEPILVPKSSFTSYPPPGGLSQLGSPSHSTGHLNIPYHTGAAQMVLSSQNR
SHFSNSALQPSALNLGSHFGVSTRQFPTGSHHNQRIQNQLVNQAGLYPGDHSNLLNNMLQ
QQLHLHNGSVAPHLMTQLQQQQHRLHHPGQRSAGYLSGFQSHLFNPRPSSGSSVISKYEH
MHGITDGRDHKPKSTHKGKHSLRFSLHGSDASSQKSDSGSFQFRSKYMTSDEIESILRMQ
HAVTHSNDPYVDDYYHQACLAKKPNVAKLKHPFCPSQIREYPPRSRANTEPHSFVQIDAL
GRVSFSSIRCPRPLLEVDPPNTSSSDQKISEKPLEQEPRFAARVTIEDGLCLLLDVDDID
RYLQFNQPQDGGTHLRRRRQVLLEGLATSLQLVDPLGKNGHKVGLAAKDDLVFIRLVSLP
KGRKLLAKYLQLLPPGSELMRIVCMTVFRHLRFLFGGLPSDPAALETTNNLAKVVCQCVR
GMDLGALSACLAAVVCSAEQPPLRPIGSTSGDGASLVLISVLERATEVLTDPHAACNFNM
GNRSFWQASFDEFFGLLTKYCMNKYHSIMQSMLIQSTSNVDDIGPDAAKSIGREMPVELL
RASLPHTDEHQRKLLLDFAQRSVPVVGFNSNTGGSGGHVNSETVLS
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgctggatatggatgggtttggaggtgggggtggtgttggtggcgctcccaacgcagag
aatcttagggaattggggaatgtttcctcagaaggtgctgtttttgacgcatcgcaatat
gcattcttcggtaaagaagctgtccaggaagttgagttgggagggttagaagatgatggc
tgtttgcctattgttgagtctaatgaggaggagttctttttcaatagagaagaggctgag
gatgtaaaatctctttctgatattgatgatcttactaccactttttggaagttgaacaag
gtcgtgagtggaccaagaagtgctggtgttattggtgaacggggatcaagagaaaattct
acttctgaatggtcacaaagggaagatagtattaactggtatgatcagaatgcttatgat
agtgaaggttctacagatggcaaaagatggtcatcacagcctcattcttccctagcccat
ttacatgattcaaagcccttgtacagaacatcttcttatcccgagcagcaaaggcaggag
caacactaccacctccaacattgctctagtgaaccagttcctaactggtttgatcagcat
atttacgacacagaaactgctcatgatcatgatggcaaacgatggtcatcacagccacat
tcctctgttgcgcatttacaagaatcaaagcccttgtacagaacatcttcatatcctgaa
aaacaacaggagcttcctcgtttttctagtgaaccaattttggtaccaaagtcttcattc
acttcttatcctccccctggtggtctatctcagctgggttctccaagccatagtacagga
cacttgaacattccttatcatactggagcagctcagatggtgctatcatctcaaaatcgt
tctcatttctctaattctgcactacagccgagtgcattaaatcttgggtcacattttggt
gtaagcacacgccaatttcctactggttcccatcataatcagcgaatacagaatcaattg
gtcaaccaggcagggttgtatcctggagatcattcaaatctccttaataatatgttacag
caacaattacaccttcataatggatcagtagctcctcacttgatgactcaattacaacaa
cagcagcatagactgcatcatcctggtcagcgatctgcaggctacttatcaggcttccag
tctcatttattcaatccccgcccttcctctggctcatctgtaatcagcaaatatgaacat
atgcatggaattaccgatggtagagatcataaaccaaaatcaactcataaaggtaaacac
agtcttcgtttttccctacatggttctgatgccagtagccaaaagagtgacagtggttca
tttcagtttcggtccaagtatatgacaagtgatgaaatagagagcattcttagaatgcaa
catgctgtgactcatagtaatgacccatatgtagatgactattaccaccaagcttgtctg
gcaaaaaaacctaatgtggctaagttaaaacatccattttgcccaagccaaataagggaa
tatcctccacgatcccgtgctaatactgagccacattcatttgttcagattgatgcccta
gggagggtttcattttcttctattcgctgtcctcgccctcttcttgaggttgaccctcca
aacacttctagctctgatcaaaagatttcagagaagcctcttgagcaggaacctaggttt
gctgctagagtcacaattgaggatggtctttgtcttcttcttgatgtggatgatattgat
cgttacctacagtttaatcagccacaagatggtggaacacatttaagacgaagaaggcaa
gtcctgttggaaggactagcaacttcacttcaacttgttgacccactgggaaagaatgga
cacaaagttgggcttgctgctaaggatgatcttgttttcattcggttggtatctcttccc
aagggacgtaagctccttgcaaagtatcttcagttgcttcctcctggaagtgagcttatg
aggatagtctgcatgaccgtatttcgtcatttaagattcttatttggtggtctcccctca
gatccggcagctttagagactacaaataaccttgccaaggttgtttgccaatgtgtccga
ggaatggatcttggtgctcttagtgcctgccttgctgcagttgtttgttctgcagagcag
cctcctctacgccccattggaagcacctctggagatggtgcttcccttgttttaatatcc
gttcttgagagggctactgaagttctaactgatccacatgctgcttgcaacttcaatatg
ggtaatcgttcattttggcaggcctcatttgatgaattttttggccttctcactaagtat
tgcatgaataaatatcatagtatcatgcaatccatgcttatacaaagtacctccaatgtg
gatgacattggaccagatgctgccaaatctattggtagagaaatgcctgtcgaactcttg
cgtgctagcctccctcacactgacgagcaccagaggaagttattgctggattttgctcaa
cgttctgttcctgtggtaggatttaacagcaacactgggggtagtggcggtcatgtgaac
tcagaaacagtgctaagttga
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