Glycine max (soybean): 100815173
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Entry
100815173 CDS
T01710
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
gmx
Glycine max (soybean)
Pathway
gmx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100815173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gmx03041
]
100815173
Enzymes [BR:
gmx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100815173
Spliceosome [BR:
gmx03041
]
Complex C
Other components
Step II factors
100815173
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Cas3-like_C_2
nSTAND3
AAA_30
AAA_16
GIPC1_GH2
Sigma54_activ_2
TsaE
ABC_tran
Flavi_DEAD
PhoH
T2SSE
ATPase
Motif
Other DBs
NCBI-GeneID:
100815173
NCBI-ProteinID:
XP_003553003
UniProt:
I1MYC5
LinkDB
All DBs
Position
18:326012..329670
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AA seq
945 aa
AA seq
DB search
MMALEDLQYLSLLSKVCTELESHTGTADKVLAEFITDLASSSENLQEFNAKLNDNGADMP
DYLVRTLFTIIRSVLFPNPTSNHLKHCANFVHDGESSQLRIIPQDATALSGISIVEKDDV
SSSLKKTMNSPEIWEAKQLIASGFLNVEERDEFIYQEEEDAEEDLEIELNQDEPAFLQGQ
TKYSVDMSPVRIFKNPEGSLSRAAALQSALTKERREVREQQHRTVFDSIPKDLNRPWEDP
MPETGERYLAHELRGVGLSAYDMPEWKKEAYGKTITFGRKSKLSIQEQRQSLPIYKLKKE
LIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEE
FGCRLGEEVGYSIQFENCTGPDTVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIY
TDLLFGLLKQLVKRRPELRLIVTSATLNAEKFSEYFFDCNIFTIPGRMFPVEILYAKQPE
SDYLDAALITVLQIHLTEPEGDILLFLTGQEEIDFACQSLHERMKGLGKNVPELIILPVY
SALPSEMQSRIFEPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDS
LVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTIPEIQRVNMATTTLNMK
AMGINDLLSFDFMDSPSTQALISAMGQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKML
LASVELGCSDEILTIISMIQTGNIFHRPREKQAQADQKRAKFFQPEGDHLTLLAIYEAWK
AKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLEVVSAGNNLTKVRKAITAGFFF
HVARKDPREGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTSKEYMREVTVIDPKWL
VELAPKFFKVADPTKMSKRKRQECLEPLYDRYHEPNSWRLSKRRA
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atgatggctttggaggatctccaatacttgtcgctcctttctaaggtttgcaccgagttg
gagtcccacaccggcaccgccgacaaggtcctcgccgaattcatcaccgatttggccagc
tcatcggagaaccttcaggaattcaacgccaagctcaacgacaacggtgccgacatgcct
gattaccttgtccgaactctcttcaccattattcgctccgttcttttccccaaccctaca
agcaaccacctcaaacactgcgccaacttcgtccacgatggcgagagctcccagttgagg
atcattccgcaggatgcaacggctctttcgggcatcagtattgttgaaaaagatgacgtt
tcttcttcgctgaagaagacaatgaactctccggaaatatgggaggcaaaacagttgatt
gcttccggtttcttgaatgtagaggagagagatgaattcatatatcaagaagaagaagat
gctgaagaggatcttgagatcgagttgaatcaggatgaacctgcattcttgcaaggccag
actaaatactcagtggatatgtctcctgttaggattttcaagaatccagaaggttctctg
agtcgtgccgctgcactccagtctgcacttacaaaggagcgcagggaagtgcgagaacaa
caacaccgtacagtgtttgattcaattccaaaggatctcaatcgcccttgggaagaccct
atgccggagacaggcgaaagataccttgctcatgagcttcggggtgttggcttatccgcc
tatgatatgccggaatggaagaaagaggcctatgggaaaaccattacctttgggcggaag
tcaaagctttctattcaggagcagaggcagagtttgccgatttacaagttaaagaaggaa
ttgattcaggctgtgcatgataatcaggtgttggtagtgattggagaaaccggttctggg
aagactactcaggttacccaatatctcgctgaagcggggtacaccacaaagggcaaaatt
ggatgtactcaaccccgcagggtggctgcgacgtcggttgcaaagagggttgcagaagag
tttggttgtcgattgggagaggaagttggttattccattcagtttgagaattgcactgga
ccggataccgtcatcaagtacatgacagatggtatgctccttagggaaatattggttgat
gagaatctgtcacagtattctgttataatgcttgatgaagcccacgagagaactatttat
actgatcttctttttggactgctgaagcagcttgtgaagcgtagacctgagctgagattg
attgtcacgtctgctactctaaatgctgaaaaattttcagaatatttctttgactgtaac
atcttcaccattcctggtagaatgtttcctgtggagatactttatgctaaacagcctgaa
agtgattacttggatgcagccttaatcactgttctacagatacatttgacagaacctgaa
ggagacattctcctcttcttgactggtcaagaagagattgattttgcttgccaatcactc
catgagagaatgaagggattaggtaagaatgttccggagctgatcattttaccggtttat
agtgcccttccaagtgaaatgcagtctaggatatttgaacctgctcctcctgggaaaagg
aaagtggttgtggctactaacattgctgaggcttctttgactatcgatggtatattttat
gtaattgatcctggatttgctaagcaaaatgtttataacccaaagcaaggtcttgattct
ttggtgataactccaatttcacaagcatcagccaaacaaagagcgggacgtgcagggcgt
actggacctgggaagtgttatcgcctctatactgagagtgcatataggaatgagatgtct
cccactacaattccagagattcaaagggtaaatatggcaacaactactctcaatatgaaa
gctatgggcataaacgatctactgtcctttgattttatggattcaccatcaacccaagca
cttatttctgccatggggcagctttacagtcttggagcattggatgaagagggcctttta
accaaattggggaggaaaatggcagaatttcctttggatccgccattgtccaagatgctg
cttgccagtgtggaacttggctgcagtgatgagattttaaccataatttccatgatccaa
actggcaatatttttcacaggcctagggaaaaacaagcccaagcagatcagaagagggca
aagtttttccagcctgaaggtgaccatcttacactacttgctatttatgaggcttggaaa
gctaagaatttttctgggccgtggtgttttgagaactttgttcaatcccgatcgttaaga
agagcacaggatgtcaggaaacagcttctcaccatcatggataagtacaaattggaggtt
gtaagtgctggaaataacctcaccaaagtcaggaaggctatcactgcaggattctttttc
catgttgctagaaaggaccctcgggaaggttacaggactctagttgagaaccagcctgta
tatatccatccaagttcagctttgttccagagacagccagactgggtcatctaccacgag
cttgtgatgacaagtaaggaatatatgcgtgaggtcactgtcatagaccccaaatggctt
gttgaattggctccaaaattcttcaaagtggcagatcctacgaagatgagcaagcgaaag
cgccaagagtgtttagaaccactttacgatagataccatgagccaaattcatggcgtttg
agtaagcgccgtgcatga
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