Glycine max (soybean): 100818501
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Entry
100818501 CDS
T01710
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1 isoform X2
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
gmx
Glycine max (soybean)
Pathway
gmx03022
Basal transcription factors
gmx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100818501
09124 Replication and repair
03420 Nucleotide excision repair
100818501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmx03021
]
100818501
03400 DNA repair and recombination proteins [BR:
gmx03400
]
100818501
Enzymes [BR:
gmx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
100818501
Transcription machinery [BR:
gmx03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
100818501
DNA repair and recombination proteins [BR:
gmx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
100818501
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
100818501
NCBI-ProteinID:
XP_003532875
UniProt:
I1KPD4
LinkDB
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Position
8:1297256..1305160
Genome browser
AA seq
768 aa
AA seq
DB search
MGYGEKGGRPPFKKHKASTKFEDPQKGIAYDDDGYGGEDAYDDDDGKTKDFSKLELKPDH
TNRPLWACGNGRIFLETFSPLYKHAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGL
ETETVINVLNKLSKTKLPKEMIKFIHDSTANYGKVKLVLKKNRYFIESPFPEVLKTLLRD
ETISRSRLISENVNGDGFTISKAAGEIEGTHDELLNEAEVAAVAEEKEAHSFEIDPSQVE
NVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSG
IIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIREEQICRFTSDS
KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI
SITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMT
KEFFAEYLKKENSKKRQALYVMNPNKFRACEFLINFHEGTRGDKIIVFADNLFALTEYAM
KLRKPMIYGATSHVERTKILQAFKTSKDINTIFLSKVGDNSIDIPEANVIIQISSHAGSR
RQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSIDTQEMYYSTKRQQFLIDQGYSF
KVITSLPPPDEGPNLSYHRLEDQLALLGKVLSAGDDQVGLEQLDEDADEIALQSARRSQG
SMSAMSGAKGMVYMEYSTVRKGQQGQIKSKPKDPAKRHFLFKRRYGAT
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgggatacggtgaaaaaggaggacgacctccattcaaaaagcacaaggcctcaactaaa
ttcgaagatccccaaaaaggaatcgcctacgatgacgatggttatggcggcgaagatgcc
tacgacgatgacgatggtaaaaccaaggattttagcaaattagagctgaaaccggatcac
accaatcgccctctgtgggcttgtggcaatggccgcatattcctggagactttctcgcct
ttgtacaagcatgcttatgattttcttatcgccatcgctgagcctgtttgcaggccggag
tctatgcacgaatacaaccttactccacactcgctgtatgcggctgtttcggttggtctg
gaaacagaaacagtcataaatgttttgaacaagttatccaagaccaagcttcccaaagag
atgattaaatttatacatgattctactgcaaattatggcaaagtgaaactcgtcctcaag
aagaatcgatatttcattgaatctccatttccagaggtattgaagacattgctcagggat
gaaactatatctcgatcaaggcttatttctgagaatgtaaatggagatggatttaccatc
agcaaagcagcaggtgaaattgaaggcactcatgatgagttgctaaatgaagcagaagtt
gcagcggttgcggaagagaaagaagcccattcatttgaaattgatccttctcaggttgaa
aatgtaaagcaacgatgcttgccaaatgcgttaaattatcccatgttggaggagtatgac
ttcagaaatgatactgtgaacccagatcttgacatggaactaaagcctcaagcacaacca
cggccatatcaagagaagagccttagtaaaatgtttggaaatggtagagcaagatctggt
ataatagttttaccctgtggtgctggaaagtccttagttggtgtttctgcagcttgccgg
ataaaaaaaagctgcctctgtttggcaacaaatgctgtttctgtagatcagtgggctttc
caatttaaactatggtcaactatccgagaagaacaaatatgtcgtttcacgtctgatagc
aaagagagattccgtggtaatgctggagttgttgtgacaacatataatatggttgctttt
ggtggtaagcggtctgaagaatctgaaaagatcattgaagaaataagaaacagagaatgg
ggattgctcctcatggatgaggtgcatgtggtaccggcccatatgtttcgtaaagtcatt
agtatcactaaatctcattgtaaacttgggctcacagctacacttgtcagagaggatgaa
aggattacagatctgaacttcctgattggtcccaagctgtatgaggccaattggctagat
ctagtaaaaggtggatttattgcaaatgtacagtgtgctgaagtatggtgtccgatgaca
aaagagttttttgctgagtatttgaagaaagagaactccaagaagaggcaggcactttac
gtaatgaatcctaataagttcagagcgtgtgagtttctcataaatttccatgaagggaca
cgtggtgataaaattatagtctttgctgataatctgtttgctctcactgagtatgccatg
aaactccgcaaaccaatgatatatggtgctacaagccatgttgagagaacaaaaattttg
caagcattcaaaactagcaaagatataaatactatatttctttccaaggtgggcgacaac
tcaattgatattcctgaagcaaacgtaataattcagatctcttcacatgctggttcaagg
cgacaagaagcccagcgtctgggtcgtattcttagggcaaagggaaagcttgaggatagg
atggcagggggcaaggaggagtataatgcatttttttattcccttgtttcaattgatacc
caggagatgtattactccactaagaggcagcaatttttaattgatcagggttacagcttt
aaggtaattactagcttgcctcctcctgatgaagggcctaatttgagctatcatcgtctt
gaggatcaattggcacttcttggaaaggtgttgagtgctggtgatgatcaagttggatta
gagcaactagatgaagatgcagatgaaattgcccttcagagtgcccgtcgctctcaagga
tccatgagtgcaatgtcaggtgcaaaagggatggtttatatggagtacagtactgtgcgt
aaaggccaacaaggacagatcaagagcaagccgaaagatccagcgaagagacatttcttg
tttaaaagaagatatggggcaacctaa
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