Glycine max (soybean): 100818545
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Entry
100818545 CDS
T01710
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
gmx
Glycine max (soybean)
Pathway
gmx03440
Homologous recombination
gmx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100818545
03450 Non-homologous end-joining
100818545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gmx03032
]
100818545
03400 DNA repair and recombination proteins [BR:
gmx03400
]
100818545
DNA replication proteins [BR:
gmx03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
100818545
DNA repair and recombination proteins [BR:
gmx03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
100818545
BRCA1-C complex
100818545
NHEJ (non-homologous end-joining)
MRX complex
100818545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
AAA_21
SbcC_Walker_B
SMC_N
Rad50_zn_hook
AAA_29
ABC_tran
AAA_16
AAA_22
Motif
Other DBs
NCBI-GeneID:
100818545
NCBI-ProteinID:
XP_003552170
UniProt:
I1MYA5
LinkDB
All DBs
Position
18:200861..211897
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNAR
SGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCVRSFQLTQKASKMEYKAIESVLQTI
NPHTGEKVCLSYRCADMDKEIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKEQAQEIKTYKLKLENLQTLKDAAYKLRESIAQDQEKTESAEC
QLQQLDGSIQELDHKIHHTEETLKYLRKLQEQISTKTAQRSILFKEQQKQYLALTEEIED
TDEELMEWKTKFEERIASLETKISRLERETEDIDCTSSTLKETIAESIEVIAKLQAEAEA
HMSFKNERDSSIHNLFTTYNLGSLPKSPFSAEVALNLTNRVKSRLEDLEKDLDDKKKAND
NEIKMAFDCYMNANDRLKHTEAKIKAMTGSKSGISKRIEEKKNELDSLELQISDENFSQL
DERERNLENEVKRKASQLDERQFEPNKCEVEKEIYSVDQKIKAVSREKDIMVSDSQDRVK
LSYKKGELESQKKKHKKIIDEQKDKIRKVLKGRVPLDKDVKKEIMQALRAVGAEFDDLNA
KYREAEKEVNVLQVKIQEVNSNLSKHHKDLESRKRYIESKLQSLDQQCSGIDSYLKVLES
AKEKRDVQRSKYNIADGMRQMFDPFERVARANHVCPCCERPFSPEEEDSFVKKQRVKATS
SAGHMKVLAVESSNAESHFQQLDKLRMLYEEYVKLGKETIPNSEKELQQLKEEMDDKSQA
LDDVLGVLAQVKSDKDLVETLVQPVENADRIFQEIQALQKQVEDLEDKHNFRAQGVRTLE
EIQLELNTLQSTKENLQSELDRLKDEQRYMEKDLSSIQMRWHTVREEKTKATNILQGVKR
LEEELERLTEEKTQVDLDEKHLADALGPLSKETDKLLANHNELKIRLEREYEDLAEQKRS
YQQEAQALFKMNSKIKTYSDLKKGDRLKELQEKKSSSESQLQSFDTRKQEILAELNKSKD
LMRGQDQLKRNIEDNLNYRKTKAEVDELAHEIETMEENILKAGRISTVETELQKLSQERE
RLLSELNRCRGTMSVYQSNISKNKVDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYY
SALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYKVLMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALV
RIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVAKDDHQHSIIESQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagtactgttgataaaatgttgatcaagggcatccggagcttcgacccggagaacaag
aacgtcatcaccttcttcaagcccttaaccctaatcgttggccccaatggtgctggcaag
acaaccatcattgagtgcttgaagctttcctgcaccggcgagttgccacctaacgctagg
tctggccacagcttcatccacgacccaaaggttgcgggggaaaccgaaacaaagggtcag
attaagctccgtttcaaaacggccgccggtaaagacgtggtctgcgtaaggtcctttcag
ctcacacagaaggcctccaagatggaatacaaggctatcgaaagtgtgcttcaaactatt
aatcctcacactggcgagaaagtttgcctcagctatcgatgcgctgacatggataaagag
attcctgccctcatgggcgtctccaaggccattctcgaaaatgttatattcgttcatcaa
gatgaagccaactggcctctccaggatccttctaccttaaagaaaaagttcgacgatatc
ttttccgctaccagatacaccaaggcactcgaagttataaagaaacttcacaaggagcag
gctcaagagattaagacttacaagctcaaactggaaaatcttcagactctcaaagatgct
gcttacaagcttcgggaaagcattgcacaggatcaagagaaaacagagtctgcagaatgt
caactgcaacagttggatggcagcattcaagaattggatcataaaattcatcacacggag
gaaacattgaaatatttgcggaagctgcaggagcagatatcaactaaaactgctcaacga
agcatcctgtttaaggaacaacagaaacaatatctagctctcactgaggagattgaagac
accgatgaagagttgatggaatggaagaccaagtttgaagaaaggattgcaagtttagaa
acaaaaataagcaggttggaaagagaaacggaggacattgactgtacaagttctaccctt
aaggagaccattgctgaatccatcgaagtgattgccaagctacaagctgaagcagaagct
cacatgtcattcaagaatgaacgtgattcctccattcacaatcttttcactacatataac
ttgggatctcttccaaagtcacctttcagtgctgaggttgctttaaacctcactaatcgt
gtaaaatcaaggttggaagatcttgagaaggacctggatgataaaaagaaggcaaatgac
aatgaaatcaagatggcatttgattgctacatgaatgcaaatgaccgtttgaaacatact
gaggctaaaataaaggctatgacagggagcaagagtggcatttcgaagcgtattgaagag
aagaaaaatgagcttgattcacttgaacttcaaatatctgatgaaaacttctctcaatta
gatgaaagagaaagaaatttggaaaatgaggttaagaggaaggcaagccaactcgacgaa
agacaatttgaaccaaataaatgtgaagtggaaaaggagatatatagtgtagatcaaaag
attaaggctgtcagtcgagagaaggatatcatggtttctgattcacaggacagagttaag
ctatcttataagaagggagagttggaaagtcagaagaagaaacataaaaagataattgat
gaacaaaaggacaaaataagaaaggtgctgaaagggagggttcctcttgataaggatgtg
aagaaggaaattatgcaagcattaagggctgttggagctgaatttgatgacctgaatgca
aagtaccgtgaagctgagaaggaagtcaatgtgttgcaggtgaaaatacaagaagttaat
agtaacctatccaaacaccacaaggatttggaatcaagaaagagatatattgaatctaag
cttcagtctttggaccagcaatgttctggaattgattcttatctcaaagttttagagtct
gccaaggagaaaagagatgtccaaagaagcaaatataatattgctgatggtatgcggcaa
atgtttgatccttttgaaagggttgcaagagctaatcatgtttgcccttgctgtgagcgt
cctttttctccagaagaagaagacagttttgtcaaaaagcaaagagtgaaggctaccagt
tcagctggacatatgaaagttctcgccgtagaatcctcaaatgcagagtctcattttcag
caattggacaagcttcgtatgctttatgaagaatatgttaaacttggcaaggaaacaatc
cctaattccgaaaaggaacttcagcaacttaaagaagagatggatgacaaatctcaggct
cttgatgatgttttaggcgttttagcacaagtaaaatctgacaaggatttggttgagaca
ttggtgcaacctgttgaaaatgctgaccggattttccaagaaattcaagctttacaaaag
caagttgaggatttagaagataagcataattttcgagcacagggagtgaggactctagaa
gagattcaattggagcttaacacattgcagagcacaaaggagaatttgcaatctgaattg
gatcggttgaaggatgaacagaggtatatggagaaggatctatcaagtattcaaatgcgg
tggcacactgtaagggaggaaaaaacaaaggcaactaacatattgcaaggtgttaaaaga
ttagaagaagaattggaacgtttaactgaagaaaagacccaagttgatctcgacgagaag
catttggcagatgctcttggacctttatccaaggagacagacaaattacttgctaaccat
aatgaactgaaaattagactcgagcgtgagtatgaggacctggctgaacagaagagaagt
tatcaacaagaagctcaagcactttttaaaatgaattctaagatcaaaacgtattctgat
ttaaagaaaggagacaggctaaaggaactgcaggaaaagaaatcttcatcagaatctcaa
cttcaaagttttgatacaaggaagcaggaaattttagctgaactaaacaaaagtaaagat
ttgatgcgaggtcaagatcaactaaaaagaaatattgaggacaacttaaattaccggaaa
acaaaggctgaagtagatgagctagcacatgaaattgaaacaatggaagaaaatatattg
aaggctggtaggatttccacagttgaaactgaactccagaaactatcacaggagagggag
agacttctttcagagttaaacaggtgccgtggaacaatgtctgtttaccaaagcaatatt
tccaaaaataaggttgatcttaagcaggctcaatacaaggacatagataagcgatacttt
gaccaacttatccagcttaagacaactgaaatggccaacaaggatctagacagatactac
agtgcacttgataaagcactgatgcgcttccacacaatgaaaatggaagaaatcaacaaa
attataagggaattgtggcagcaaacctatagaggacaagatatagactacatcagtatt
cattcagactccgaaggtgcagggacccgttcctacagttacaaggttctcatgcagact
ggtgatgcagagttggagatgagaggaagatgtagtgcaggtcagaaggttctggcctct
cttatcatacggttggctttagctgaaacgttttgtctcaattgtggaatacttgcactg
gacgaacctaccacaaatttggatggaccaaatgctgaaagtctagctgcagctctcgta
aggatcatggaggacaggaaagggcaggaaaattttcagctaattgtaatcactcatgat
gagcgttttgctcaactgatagggcagcgccagcatgcagagagatattatcgtgtcgcc
aaagatgaccatcagcacagtataatcgaaagccaggagatatttgactga
DBGET
integrated database retrieval system
