Glycine max (soybean): 100818905
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Entry
100818905 CDS
T01710
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
gmx
Glycine max (soybean)
Pathway
gmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100818905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100818905
03036 Chromosome and associated proteins [BR:
gmx03036
]
100818905
Enzymes [BR:
gmx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100818905
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
100818905
mRNA degradation factors
5'-3' decay
Decapping complex
100818905
Chromosome and associated proteins [BR:
gmx03036
]
Eukaryotic type
Gene silencing
piRNA pathway
100818905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Aldedh
DS
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
100818905
NCBI-ProteinID:
XP_003521117
UniProt:
I1JKA6
LinkDB
All DBs
Position
3:1312161..1318415
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AA seq
499 aa
AA seq
DB search
MNHNNNNRARYPPGMGLGRGGFNPNPSQNPNLNQNPSLNQNHHAFQARPPYHHQQQRVQY
VQRHLLQQQQQQWLRRDGSAAVDEVEKTVQSEAVDSSSQDWKARLKIPPADTRYKTEDVT
ATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFC
IPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELAKHLKIQVMVTTGGTSLKDDIMRL
YQPVHLLVGTPGRILDLAKKGVCILKDCAMLVMDEADKLLSPEFQPSIEQLIHCLPTTRQ
ILMFSATFPVTVKDFKDRYLRKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKL
QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD
LFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQE
LGTEIKQIPPQIDQAIYCR
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgaatcacaacaacaacaatagagcgaggtaccctcccgggatggggcttgggcgcggt
ggtttcaatccgaacccgagccagaacccgaacttgaaccagaacccgagcctgaaccag
aatcatcacgcgttccaggctcggccaccgtaccatcaccagcaacaacgggtgcagtac
gtgcagaggcatttgctgcagcaacagcagcagcaatggctgagaagggacggcagcgcc
gccgtcgacgaggtcgagaagaccgtgcagtctgaagccgtggattcgagttctcaagat
tggaaggcaagactaaagattccaccagctgatactcgctataaaacagaggatgtaacg
gcaactaaaggaaatgagtttgaggattactttttgaagcgtgagctgctcatgggaata
tatgagaagggttttgaaaggccttctcccatccaagaagaaagcattccgattgctctt
actggtagtgacattcttgctagggctaagaacggaactggcaaaacagctgcattttgc
attcctgcattggaaaaaattgaccaggataataatgttattcaagttgttatactggtc
ccaacccgagaattggcattgcaaacttctcaagtgtgcaaagagcttgcaaagcacttg
aagattcaagttatggttacaacaggtggtaccagcctgaaagatgatataatgcgctta
tatcaaccagttcatttactagttggaactccaggaagaatattagatcttgccaagaaa
ggtgtttgtattctgaaagattgtgctatgcttgttatggatgaggccgataagcttctg
tccccagagtttcaaccttctatagagcagctgattcattgtcttcctacaacccgtcaa
atcttgatgttttcagcaacatttcctgttactgtaaaggatttcaaagataggtatctt
cgaaaaccttatgtcatcaaccttatggatgagctaactctgaagggtattactcaattt
tatgcattcgtggaagagagacagaaagtccactgcctaaatactctattttctaagctg
caaataaaccagtctatcatcttctgcaattcagtgaatcgggttgaacttcttgccaag
aaaatcacggaacttggttattcatgtttctacattcatgcaaagatgttgcaggaccat
cgtaacagagtgtttcatgacttccgcaatggtgcatgtcgaaatcttgtttgtactgat
ctttttactagaggaatagatattcaagcagttaacgttgttattaattttgattttccc
aagaacgcagagacttatttgcacagggttggtcgttcagggaggtttgggcacctgggt
ttagcagtgaacttgattacctatgaggatcgctttaatttatataggattgaacaagaa
cttggaactgaaataaagcagattcccccacaaattgatcaggcaatttattgccggtga
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