Glycine max (soybean): 100819202
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Entry
100819202 CDS
T01710
Name
(RefSeq) general negative regulator of transcription subunit 3
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
gmx
Glycine max (soybean)
Pathway
gmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100819202
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100819202
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100819202
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100819202
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
100819202
NCBI-ProteinID:
XP_006599434
UniProt:
I1MNT5
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Position
16:31498901..31512776
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AA seq
886 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPREKAKSETRDWLNNVVGELENQIDNFEAELEGLSVKKGKNRPPRLTHLETSITRHKA
HIKKCEFILRLLDNDELSPEQVNDVKDFLDDYVDRNQDDFEEFSDVDELYSSLPLDKVES
LEDIVTIPPGPAKVTPVLSLKPSVAASASASQTSEQADDTASQDSNSDFVARTPPPKSSI
VSPTATTPAGNFATPVSMNVPVPNLSSPPAIASVMPGSNSVQSSLEISSPVDASSFVNQS
STMKEEEINSFPGQRPSPSLSDVTLVRNISRNSVSNQATNSIPLASGNMVSSNGPLGSVP
SAPEITKRNILVGDDRLGSNGMVQPLVSPLSNRMIMPQVARPNDGTSSVDSSSVNEAATV
SGRVFSPSAVPGMQWRSGSPFQNQNDVVQVRGRTEIAPDQRERYLQKLQQVQQQGQSAIL
NMPSFVAGNPKQFSAQQQNPLLQQFNSQGSSVASQSGVGLGVQSPGLSGIASTSLPQPPN
SVHSPSSQQSLLLVVSKDADVGNSKGDEPQQQIFPDDSGTESTASNGIGKNFVNEDELKS
TYAVDSPAGVPASLPEPAQTSRDIDLSPGLPLQSNQRTGNLGVIGRSSTDLGALGDNFSA
STANSGGVRDQLYYLQMLEAAHLKLPQPKDSERPRTYTPKHPTITPPSFPQVQAPIVNNP
AFWERVGIEQYGTDTLFFAFYYQQNTYQQYMAAKELKKQSWRYHRKYNTWFQRHEEPKVA
TDEYEQGTYVYFDFHIANDDLQHGWCQRIKTDFTFEYNYLEDEPIV
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgagtcgaaaactccaaggcgagattgatcgcgttcttaagaaggttcaggaa
ggcgtcgaagtcttcgatagcatctggaacaaggtttacgacaccgataatgcgaaccag
aaggagaagttcgaggcggacctgaagaaggagattaagaagctgcagaggtacagggac
cagattaagacttggattcagtccagtgagatcaaagacaagaaggttagtgcctcatat
gagcaggctctggtggatgcacgcaagcttattgagcgtgaaatggaaagattcaagatc
tgtgagaaggagacaaagacaaaagcattctccaaagaaggcttaggtcaacagcctaaa
actgatcctagagagaaggctaaatcagagacaagggattggttgaacaatgtggttggg
gagttagaaaatcagattgataactttgaagctgagcttgaaggactttctgtcaagaaa
ggaaagaacaggcctcccagattgacacatctagaaacatcaattactcggcacaaggct
catataaagaaatgtgaatttatcttgaggctactagataatgatgaactaagtccagag
caggttaatgatgtcaaagatttcctggatgactatgtagaccgtaatcaggacgacttt
gaagaatttagtgatgttgatgagttatatagttcattacccttagacaaggtggagtca
cttgaagatattgttacaattccccctggtcctgctaaggtgacacctgtgcttagcttg
aagccttctgtggcagcttcagcttcagcatcacaaacatctgagcaagctgatgataca
gcttcccaggatagcaattctgattttgtcgcaagaactccacctcctaaaagtagtata
gttagtcctactgctacaacaccagcagggaattttgctactcctgtttctatgaatgtt
cctgtgcctaacttgtcgagtccaccagccattgcatcagtcatgcctggttcaaattct
gttcagagttccttggagattagtagtcctgtggatgcttcatcttttgttaatcagtct
agcactatgaaggaggaagagattaatagtttccctggtcaaagaccatctccatcgctt
tctgatgttacactcgtaaggaacatcagcagaaacagcgtatcaaatcaagcaacaaat
agcatacctcttgcttctggcaatatggtttccagcaatgggccccttggttcagtgcct
tctgcacctgaaataaccaagagaaacatattggtaggtgatgatagactcggaagcaat
gggatggtgcagcctcttgtatcccctttaagtaatagaatgatcatgcctcaggttgct
aggcctaatgatggaacttcctcagttgactctagtagtgtcaacgaagctgcaactgta
tctgggagagtgttctccccttctgctgttcctggcatgcaatggagatctggaagcccc
ttccagaatcagaatgatgtggttcaggttcgtggaagaactgaaatagctcctgatcaa
agggaaaggtatttgcagaagttgcagcaagtgcagcaacaagggcaaagtgccattctt
aatatgccatcttttgtagcagggaatcctaagcagttttctgctcagcaacaaaatcct
ctcttacagcagttcaattctcaaggctcatctgttgcatctcaatctggtgtgggactt
ggagtccagtcaccaggtcttagtggtattgcttccacctcattaccgcagccaccaaat
tctgtccattccccatctagtcaacagtcattgctattagttgtttccaaagatgcagat
gttggcaattctaagggtgacgagccacaacaacagatttttcctgatgattcagggact
gaatctactgctagtaatgggattggcaagaattttgtgaatgaagatgaattgaaatcc
acatatgctgtagattctcctgctggagtacctgcctctcttcctgagcctgctcagact
tctagagatattgatttgtctcctggcctacctttacaatcaaatcagcgtactggtaac
cttggtgttataggaagaagttcaactgaccttggagctcttggtgacaacttcagtgca
tcaactgctaattctggcggagttcgtgatcaattatattatttacagatgcttgaggca
gcccacctcaaacttccacaacctaaggactcagaacgtcctaggacctatactcctaaa
caccctacgataacacctcctagttttcctcaagtacaggcacctattgttaataatcct
gctttttgggagagagtaggtatcgaacaatatggcactgataccctgttctttgcattt
tactatcaacagaacacttaccaacagtatatggctgcaaaagagctaaagaagcagtct
tggagatatcaccggaagtataacacatggtttcaacggcatgaagagccaaaagttgca
acagatgaatatgagcagggaacgtatgtgtactttgatttccatattgcaaatgatgat
ctgcagcatggctggtgtcaaagaatcaagaccgacttcacctttgaatataactatctt
gaagatgagcctattgtctag
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