Glycine max (soybean): 100819332
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Entry
100819332 CDS
T01710
Name
(RefSeq) protein RRP6-like 2 isoform X1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
gmx
Glycine max (soybean)
Pathway
gmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100819332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100819332
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
100819332
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Antig_Caf1
Motif
Other DBs
NCBI-GeneID:
100819332
NCBI-ProteinID:
XP_003525715
UniProt:
K7KNU4
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Position
5:complement(14538048..14561291)
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AA seq
877 aa
AA seq
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MNVDHDQPPSVAKAQALQTLTAGSLSSSVAKLAASSRCIPSDKDFHFYRNFEEFKVPVDE
IARESRSMLEAFGAVAAHAAFPGDVDDDAAYDWLVNANDDILERFDVSADEFRKVLQEEE
ARRPAMHSMEEDGFQLVSGRKKKGGRGNVTLAATDSETVASPGVTVATKDKKTMGPKSKV
PFHIPTIRRPQDEYSIVVNNANMPFEHVWLQRSDDGLRFIHPLEKLSVLDFVDTNLEDVV
PVKPPSIESTPFKLVQEVKDLKELVAKLRSVNEFAVDLEHNQYRSFQGLTCLMQISTRTE
DFVVDTLKLRIHIGPYLREIFKDPAKRKVMHGADRDIVWLQRDFGIYICNLFDTHQASKL
LNLERNSLEHILHHFCEVTANKEYQNADWRLRPLPNEMLRYAREDTHYLLYIYDLMRIRL
FALSKESESSESSDTPPVEVYKRSYDVCMQLYEKEFLTENSYLHIYGLQGAGFNAQQLAI
VSGLCEWRDIVARAEDESTGYVLPNKSVLEIAKQMPLTTSKLRRLVKSKHPYVEHNLDTV
VSIIRHSIQNSAAFEEAAQQLKEAQAGTASDVVPFTDGTEDPQSHTQDSKESSNHQDTNV
PINLKSNSLRSEPPKDSLTIADQNRDANVGALSTTKGNGATVQVLKKPTGAFGALLGNSA
SKRKLGPDKGKEDSKLEQIRSSVSLPFHSFLGSSEKSEPTVETHTVASEMLESQRPVSDV
VSVSPLDEIIMLESGTGAENMEQNNLESSSEHREKDSVVSISGKEDEDESVSLLELSSNF
KKCFHSNDQNYKTRWPKKTEQPSGLVPMKPFDYEAARKHVKFGEHTKHASSKGSDSHMEV
EDSGSKKQRSTIGQGQLPQGRRRQAFPASGNRSSTFR
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtggatcacgatcagcctccctcggtggccaaggcccaagcgctgcagacccta
acggcaggttctctctcgtcgtcggtggcgaagctcgccgcatcctcgcggtgcatccct
tccgacaaggacttccacttctaccgcaacttcgaggagttcaaggtccccgtcgacgaa
atcgcgcgggagtctcggtcgatgctcgaggccttcggcgctgtggcggcccacgcggcg
ttccctggcgacgtcgacgacgacgccgcttacgactggctagtgaacgcgaatgacgac
attttggagcggttcgacgtgtcggcggacgagttccggaaggtgctgcaggaggaggag
gctcggcgtccggcgatgcattccatggaggaagacgggtttcagttggtttctgggagg
aagaagaaaggggggagaggaaatgtgactctggcggctacggattctgagacggtggcg
tcaccgggagttacggtggcaaccaaggataagaagacgatggggccgaagtcgaaggtt
ccgtttcatataccgacgattaggaggccgcaggatgagtatagtatagtggttaataat
gcgaacatgccgtttgagcatgtttggttgcagaggagtgatgatgggttgaggttcatt
catccactggaaaaactatctgttttggattttgttgatacaaatcttgaggatgttgtg
ccagtgaagcctccctcaatagaaagcaccccttttaagctcgtgcaggaagtcaaagat
ttaaaagagttggtggctaagctgcgttctgtgaatgaatttgcggttgatttggaacat
aatcaatatcggtctttccaaggtttgacttgcctgatgcaaatttcaacaaggaccgaa
gattttgttgttgacacattgaaacttcgcattcatattggaccctatctaagggaaatc
ttcaaggaccctgccaaaaggaaggtcatgcatggtgcggatcgagatattgtgtggctt
caacgagactttggaatttatatttgtaatttgtttgacactcaccaggcttcaaagttg
ctaaacttggagagaaatagtttggagcatattctacatcatttttgtgaagttactgca
aacaaagaataccaaaatgcagactggagactacgtccacttcctaatgagatgctaaga
tatgccagagaagatacacactatctgttgtatatatatgacttaatgaggattaggtta
tttgccttgtctaaggagtctgaaagttccgagtcttcagacactcctccagtggaggtc
tacaaacgcagttatgatgtttgcatgcagctatatgagaaagaatttctgacagagaac
tcctatcttcatatatatgggttgcagggggccggtttcaatgctcaacaacttgctatt
gtttctgggttgtgtgaatggagggacattgttgcccgtgcagaggatgagagtacagga
tatgtattgccaaataaatctgttcttgaaatcgctaagcagatgcctcttactacaagc
aagctacggcgattggtgaagtcaaaacacccttatgttgaacacaatcttgatactgtt
gtcagcatcattaggcattctattcagaattcggctgcatttgaggaagctgctcaacag
ttgaaagaggcacaagctggcactgcatcggatgtagtaccctttacagatggaactgaa
gatccccaatcccatacacaagattctaaggaatcttctaatcatcaagatacaaatgta
ccaataaatcttaagtccaatagtcttagatccgagccaccaaaggatagtctcacaatt
gcagatcagaatagggatgctaatgttggtgcactttctactacaaagggaaatggagca
actgttcaggtgctaaaaaagcctactggtgcttttggggcactccttgggaattctgct
tcaaagaggaagcttggtcctgataagggcaaggaagacagcaagctagagcagattaga
tcttctgtcagtcttcctttccattcatttttgggtagcagtgaaaagtcagaacctaca
gtagaaactcatactgtagcatctgaaatgttagagtcacagagacctgtttctgatgta
gtttctgtctctcctctagatgagattataatgctagaatcaggcacgggtgcagagaat
atggagcagaataacctagaaagctccagtgagcacagggagaaagattctgttgtgtcc
atttcgggaaaagaggatgaagatgagtcagtatcactgttggaattgtcatcaaatttt
aaaaaatgctttcattcaaatgatcaaaattataaaaccagatggcccaagaaaactgaa
cagcccagtggcttagtgccgatgaagccatttgattatgaagctgcaaggaaacatgtt
aagtttggagaacatacaaagcatgcatcttccaagggttctgatagtcatatggaggta
gaggactcaggcagcaagaagcagcggtcaacaataggacagggacaattgccacaaggt
agaagacgtcaggcatttcctgcttctgggaatcgtagttcaacattccgctga
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