Glycine max (soybean): 100819776
Help
Entry
100819776 CDS
T01710
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
gmx
Glycine max (soybean)
Pathway
gmx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100819776
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gmx03041
]
100819776
03009 Ribosome biogenesis [BR:
gmx03009
]
100819776
Enzymes [BR:
gmx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100819776
Spliceosome [BR:
gmx03041
]
Complex A
U2 snRNP components
U2 related factors
100819776
Complex B
100819776
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
100819776
Ribosome biogenesis [BR:
gmx03009
]
Eukaryotic type
90S particles
Helicases
100819776
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
nSTAND3
ResIII
SRP54
ABC_tran
T2SSE
AAA_7
AAA_30
Flavi_DEAD
PhoH
TsaE
AAA_11
AAA_29
Motif
Other DBs
NCBI-GeneID:
100819776
NCBI-ProteinID:
XP_003518717
UniProt:
I1JBE2
LinkDB
All DBs
Position
2:complement(996623..1000469)
Genome browser
AA seq
722 aa
AA seq
DB search
MGTERKRKVSLFDVVDDAAAKMSKSNGGAVAANNLINRWNGKPYSQRYHDILEKRKTLPV
WHQKEEFLQALKDNQTLILVGETGSGKTTQIPQFVLEAVDIETTDKRRKMMIACTQPRRV
AAMSVSRRVAEEMDVSIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKV
IILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQGYFSGAPLMKVPGRL
HPVEIFYTQDPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKINKEISNMG
DQVGPVKVVPLYSTLPPAMQQKIFEPAPPPVKEGGPPGRKIVVSTNIAETSLTIDGIVYV
IDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQP
QTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLT
KLGQIMSEFPLDPQMSKMLVVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKAADEAKAR
FGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLC
STDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIY
NEYVLTSRNFIRTVTDIRGEWLVDVAPHYYDLSNFPQCEAKRVLERLYKKREKEKEEARS
RK
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagcggaagaggaaggtgagcttgttcgacgtagtggacgacgctgccgcc
aagatgtccaaatcaaacggcggcgccgtcgccgccaacaacctcattaaccggtggaac
gggaagccttattcgcagaggtaccacgacattttggagaagaggaaaaccctaccggtg
tggcaccagaaggaggagttcttgcaggctttgaaggataaccagactctcattctcgtt
ggcgaaaccggtagcggcaaaaccactcagattcctcagtttgttttggaagctgtggat
atagaaaccactgataaacgtaggaagatgatgattgcgtgtactcagcctcgtagagtg
gctgcaatgtctgtttccaggcgtgtggctgaggagatggatgtgagtattggagaagag
gttggctacagcatcagatttgaggattgcagtagtgccaggacagttttgaagtatctc
actgatggtatgcttttgagagaggcaatgacggatccgctattggagcgatacaaagta
attattctggatgaagcacatgagaggactttggctactgatgtgctatttggccttctt
aaggaagtgcttagaaatagacctgacttgaagttagttgttatgagtgcgacacttgaa
gctgagaagttccagggatattttagcggggcccctcttatgaaggttcctggaagacta
catccggtggaaattttctatacccaggatccagaaagggattacttggaggctgctatt
aggacagttgtgcagatacacatgtgtgaaccttctggagatatacttgtttttctcact
ggagaggaagagattgaggatgcatgccgcaaaataaacaaagaaatttccaatatggga
gaccaggtgggccctgtgaaagtggtgcccttgtattctactcttcctcctgcaatgcag
cagaagatttttgagccagctccacctccagttaaggagggagggcctcctggaaggaag
attgtggtatcaacaaacatagcagaaacgtccttgacaattgatggtatagtctatgtt
attgaccctggatttgctaagcagaaggtttataaccctcgagtccgtgttgagtctttg
ttggtgtctccaatatcaaaggctagtgcacaccagagatctggacgtgctggaagaact
caaccagggaaatgttttagactctatactgaaaaaagtttcaataacgatcttcagccg
cagacctatcctgaaattttgagatctaatcttgccaacactgttcttaccttaaagaaa
cttggtatagatgacttagtgcattttgatttcatggaccctcctgccccggagacctta
atgcgtgcattggaagtgttgaattacttgggtgcactggatgacgatggtaacttaaca
aagctgggccagattatgagtgaatttccactggaccctcagatgtcaaagatgctcgtt
gttagtcctgaattcaactgttcaaatgagattctttccgtttctgccatgctatcagta
cccaattgctttgtccggcctagggaggcacaaaaagctgcggatgaagcaaaagctagg
tttggacacattgatggggatcatctcacgctcttgaatgtataccatgcctacaagcaa
aataatgaggatccttcttggtgttatgataacttcgttaatcatagggcattgaaatca
gcagacaatgttagacaacaacttgtgcgaatcatggctcggtttaacctgaagttatgc
agcactgatttcaatagccgggactactatgtcaacattagaaaggcaatgctagcaggg
tattttatgcaggtggcccatctggagcggacaggacattacttgacagtgaaagacaac
caggtggtgcacttgcatccatcaaattgcctggaccacaagccggagtgggtaatatat
aatgaatatgttcttactagtcggaattttattcgaactgtgacagatatacgtggagaa
tggttagtggatgtagccccacattactatgatttgtcgaattttccacaatgtgaagct
aagcgtgttcttgagaggctttacaagaagcgagagaaggaaaaggaggaagccaggagt
cgtaaatga
DBGET
integrated database retrieval system
