Glycine max (soybean): 100819928
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Entry
100819928 CDS
T01710
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
gmx
Glycine max (soybean)
Pathway
gmx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100819928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gmx03041
]
100819928
Spliceosome [BR:
gmx03041
]
Complex A
U1 snRNP components
U1 related factors
100819928
Complex B
100819928
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
Motif
Other DBs
NCBI-GeneID:
100819928
NCBI-ProteinID:
XP_003549369
UniProt:
I1MXF9
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Position
17:38939790..38955633
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AA seq
1008 aa
AA seq
DB search
MANNSQPSSMQFRPVIQAQQGQPFVPMNSQQFGPAGHAIPSSNAGMPVIQGQQLQYSQPM
QQLTPRPMQPGHPVPSSQAIPMQYIQTNRPLTSIPTHSQQTVPPFSNHMPGLAVSVAAPH
SSYFTLSYGQQQDNANALAQYQHPPQMFASPAGQSWPSSASQSVAAVTSVQSAGVQSSGA
ASTDTVTNATNQQSLSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWK
EFTSEGRKYYYNKVTQQSTWSIPEELKLAREQAQKAANQGMQSETNDTSNAAVSSTATPT
PTPTAVNAASLNTSLTSNHSNGLASSPSSVTPIAATDSQQSVSGLSGSSVSHSIVTPSTT
GVEPSTVVTTSAAPTIVAGSSGLAENSPQQSKMPPLVENQASQDFASVNGSSLQDIEEAK
RSLPVVGKNNVVPPEEKTNDDETLVYANKLEAKLAFKALLESVNVQSDWTWEQAMREIIN
DKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSMRWS
KAISMFENDERFNAVERLRDREDLFESYMVELERKEKENAAEEHRRNIAEYRKFLESCDY
VKANSHWRKIQDRLEDDDRYLRLEKIDCLLVFQDYIRDLEKEEEEQKRIQKDQIRRGERK
NRDAFRKLLEEHVAAGILTAKTQWHEYCLKVRDLPQYQAVASNTSGSTPKDLFEDAAEDL
EKQYHEDKTLIKDTIKSGKITVVTTSVFEEFKVAVLEEAACQTISEINLKLIFEELLERA
KEKEEKEAKKRQRLADDFTNLLYTFKDITASSKWEDCKSLFEEAQEYRSIGDESYSREIF
EEYITYLKEKAKEKERKREEEKAKKEKEREEKEKRKEKEKKEKDREREKDKSKERHRKDE
TDSDNQDMTDGHGYKEEKKKEKDKERKHRKRHQSSIDDVDSEKEEKEESKKSRRHGSERK
KSRKQADSPESDNENRHRRHKREHWDGSRKTGGHEELEDGELGDDVEN
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atggccaataattctcaaccctccagcatgcagtttcggccagtcattcaagctcagcaa
gggcaaccatttgttccaatgaattcacaacaatttggacctgcaggacatgctattcct
tcttcaaatgcgggaatgcctgtcattcaaggtcagcaattgcagtattctcaaccaatg
cagcagttgactccaagaccaatgcagcctggtcatcctgttccttcatcacaagctata
cctatgcaatatattcagacaaaccggccactgacatccattccaacacattcacagcaa
actgttcccccttttagcaatcatatgcctggcttggctgtttcagtagcagctcctcat
tcttcatatttcacactatcttatggtcagcagcaagataatgcaaacgcattggctcaa
taccagcatccacctcaaatgtttgcttctcctgctggtcaatcttggccatcctctgca
tctcagagtgttgcggctgttacatctgtgcagtcggctggggtgcaatcatctggtgct
gcatcaactgatacggtgactaatgctactaaccagcaatccttatctgattggcaagag
cacacttctgctgatgggagaagatattattacaacaagaggacaaggcaatcaagttgg
gaaaaacctttagaattgatgtcacctatagagagagctgatgcatcaactgtttggaaa
gaattcacttcagaaggaagaaagtattattacaacaaggttactcagcaatcaacgtgg
tcaataccagaggaacttaagttggctcgtgagcaggcacagaaagctgcaaaccaggga
atgcagtcagaaacaaatgatacatccaatgctgcagtctcctccacagcaacaccaaca
ccaacaccaacagcagttaatgcagctagcttgaacacttccttgacatcaaatcattca
aatgggcttgcttccagcccatcttctgtcacaccaattgcagcaaccgattctcaacag
tcggtttctggattatctgggtcctctgtttctcactctatagttaccccaagcaccaca
ggagtagaaccaagcactgtggtaactacgagtgctgcacctacaatagttgcaggaagc
tctggactagctgagaattcacctcaacaatccaaaatgccaccccttgttgaaaatcaa
gcatctcaagattttgcttctgtaaatggatcttctcttcaagatatcgaggaagccaaa
agatcattgcctgtggttggaaaaaataatgttgttccacctgaagagaaaaccaatgac
gatgaaaccttggtatatgcaaataaactggaagcaaaacttgcatttaaagctcttttg
gaatctgtgaatgttcagtctgattggacatgggaacaggcaatgagagaaatcatcaat
gacaaaagatataatgccctaaaaacacttggtgagcgaaaacaggcttttaatgagtat
ttgggtcaaaggaagaagctggaggctgaagagaggcgcatgaagcagaaaagagcccgt
gaagaattcacaaaaatgttggaagagtgcaaggaacttacatcatccatgaggtggagc
aaagctattagtatgtttgaaaatgatgaacgattcaatgctgttgaaagactaagggac
cgagaagatttatttgaaagctacatggtggaacttgagaggaaggaaaaggaaaatgct
gcagaggaacaccgccggaatatagcagaatatagaaaatttctggagtcctgtgactat
gtgaaggcgaatagtcattggcgaaaaatccaagatcggttagaggatgatgatagatac
ttgcgacttgaaaaaattgactgcttgctagttttccaggactatattcgggacttggag
aaagaagaagaggaacaaaaaagaatacagaaggatcaaatccgtcggggtgaaaggaaa
aaccgtgatgcatttcgcaagttgcttgaagaacatgttgctgctggaattcttactgct
aaaactcaatggcatgaatattgcttgaaggtcagggatttacctcaatatcaagctgtt
gcgtcaaatacatctggttccactccaaaagatttgtttgaggatgctgcagaggatctt
gaaaaacagtatcatgaagacaagacgctcataaaagatacaattaagtcaggcaagatc
actgtagtgactacatcagtatttgaagagtttaaggttgctgtcttggaagaagctgca
tgccaaacaatatccgagatcaatttgaagcttatattcgaagagttgttagagagagcc
aaggagaaggaggagaaagaagccaagaagcgccaacgccttgctgatgactttactaac
ctgttatatacattcaaggatattactgcttcctcaaaatgggaggattgcaagtctctt
tttgaggaggctcaagagtacaggtcaattggagacgaaagctatagtagagaaattttt
gaggaatacatcacatacttgaaggaaaaagctaaagagaaggaacgcaagcgtgaagag
gaaaaggctaaaaaggagaaagaaagagaagagaaagagaaacggaaggagaaggagaaa
aaagaaaaagatagagaacgtgaaaaagataagtctaaggaacgtcataggaaggatgaa
acagatagtgataatcaagatatgactgatggccatggttacaaagaggagaagaaaaaa
gaaaaggataaggaaaggaaacatcggaaaaggcatcagagcagtatagatgatgtggat
tctgaaaaggaagagaaggaagaatctaaaaaatcacgaaggcatggcagtgaacgcaag
aagtctcggaagcaagcagactctcctgaatcagacaacgaaaaccggcatagaagacac
aagagggagcactgggatggttcaaggaaaactggggggcatgaggaacttgaagacggg
gagctcggggatgatgttgagaactag
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