Glycine max (soybean): 102662278
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Entry
102662278 CDS
T01710
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
gmx
Glycine max (soybean)
Pathway
gmx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102662278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmx03021
]
102662278
03019 Messenger RNA biogenesis [BR:
gmx03019
]
102662278
Transcription machinery [BR:
gmx03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102662278
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
102662278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Motif
Other DBs
NCBI-GeneID:
102662278
NCBI-ProteinID:
NP_001358683
UniProt:
A0A0R0EYS5
LinkDB
All DBs
Position
19:45344828..45353030
Genome browser
AA seq
997 aa
AA seq
DB search
MNMERSLDRSREPGPKKPRLIEELSARQLPLRPAAVTTLPSTRFRAYDRDSGGGGGYQPQ
PPPHQELVIQYKTALAELTFNSKPIITNLTIIAGENLSAAKAIAATVCANIIEVPSDQKL
PSLYLLDSIVKNIGRDYIKYFASRLPEVFCKAYRQVDPCVHSSMKHLFGTWKGVFPPQSL
QMIEKELGFAPAVNSSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQQSSRSKGVVND
MTEAVLNSNEDLERPDRALSAARPWLDPRINMLNNQHTHRDAFNDSVPEKSMDGSSYGGS
EYSSVISSNLGSGAGRTGSKLIDLGHDRTWFKTDGGDADTTSGQRNGFNLKHSFSNHEAP
KSMNLDAHCQPRQSITNKQNDVMSCNWKTSEEEEFMWDEIDNGLIDHGPNVSKTLSTDTW
MADVENLEGEDHLQITRPFGAKVNREISTVKNQLPGLGGHPPSSWQLQNLKPGYSEGFVS
SHSALPANASSLTVKKGNQSFMSNSVVGRVKFVGQQFDSGETESPSWQSPLRQQSPSLPG
TVHHPHSMQNFADQELPQNLKTSQFLGGPITQHIRDHSLTLRPIVQVGNLRRSQEKDMQG
PLSSMTSFRPKLQQKQLDPSQSKVSLTRETSAQLTTNNLSAAPVKSGVIPKKSITCDPDP
RKHPSQTGVQPTQSGRPTTLDPLHNDSSTLPKNTQGKAGQPPQRLSTQPPASSNISSSSA
PTLNTAKNNKLNPISNLLSSLVAKGLISAETESPTMVPSEVPKGSKDQTEIITTSCSLPV
TSISGSAAVPVSSSGDEVDSATKTSLASPQSTSTEIRNLVGFDFRPNVIREFHPSVIREL
WDDFPHNCKVCGIKLKQEELFNRHLEWHATREHGPIKASRSWYAESSDWIAGKAEYSSES
GFNDSVDVHEQKTDSSQLDTMVLADENQCLCVLCGELFEDAYCHERNEWMFKGAVYMNYS
DVNCEMESRNVGPIIHAKCLSENSIVTNLAFLQKQIA
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atgaacatggagagatcgttggacagatcgagagaacccggtcccaagaagcctcgatta
atcgaggaactcagcgcccgacaattacctctacgccctgcggcagttactacgttgccg
tctacgaggttccgagcatatgacagagactccggcggcggcggagggtatcagccgcag
cctccgccgcaccaagagcttgtgattcagtacaagaccgcgcttgctgagctcactttc
aattcgaagccaataattaccaacttgactattattgctggagagaacttgtctgctgcc
aaggcaattgctgccaccgtttgtgctaatattatagaggttccgagtgatcaaaaactg
ccatctctttatctcttagacagtattgtgaagaacattggacgggattatataaaatat
tttgcttccagactacctgaggtattctgcaaggcttacagacaggttgatccttgtgtt
cattcaagtatgaaacatctttttggaacttggaaaggagtctttcctcctcagtccctt
cagatgattgagaaggaacttggctttgcacctgcagtcaatagttcagcttcagtatct
gctacagtcaggagtgatttgcagtcacaacgcccacctcatagtatccatgtgaatccc
aagtatttagaaaggcagcgtcttcagcagtcaagtaggagtaaaggagtagttaatgat
atgactgaagctgttttaaactcaaatgaggatttggagaggccagatagagctttgagt
gctgctcgaccatggctggatcctaggattaacatgcttaataatcagcacacacataga
gatgcatttaatgattctgttcctgaaaagagcatggatgggtcatcatacggaggcagt
gaatatagttctgtcatttcaagtaatttgggttcaggggctggaagaactggaagtaag
ctcattgatttaggacatgacagaacatggttcaaaacagatggtggtgatgcagatact
acatctgggcaaagaaatggtttcaatctgaagcatagtttttctaatcatgaagcacca
aagtccatgaatttggatgcacattgtcagccgagacaaagcataactaacaaacagaac
gatgtgatgtcatgtaactggaaaacttctgaagaagaggagttcatgtgggatgagatt
gacaatggtttgattgatcatggacccaatgtatcaaaaactttgagcacggacacatgg
atggcagatgttgaaaatttggaaggtgaagatcacctccaaattacacgcccttttggg
gcaaaggtcaatagagaaatatccactgttaagaatcaattacctggtttggggggccat
ccaccatcatcgtggcaattgcagaatctaaagccaggctactcagaaggatttgtgtcc
tctcatagtgccttaccagccaatgcaagttctttgactgtcaagaaggggaaccaatcc
tttatgtcgaattcggtagtaggaagggtcaaatttgtgggacaacaatttgattctggg
gaaactgaatccccttcttggcagtcacctttgcggcaacagtctccatcactgccagga
acagtacaccaccctcattcaatgcaaaattttgctgaccaagaattaccccagaatctc
aaaacctctcaatttttgggaggtccgataactcagcatattagagatcactcccttacg
ctacgcccgattgttcaggttggtaacttgcgaagatcacaggaaaaggacatgcagggc
ccgttatcttccatgacttcttttcgaccaaagcttcagcaaaagcagctggacccgtct
cagtctaaagtttctttaaccagagaaacttcagcacagttgaccacaaataatttgtca
gctgcacctgtcaagagtggagtcatccccaagaaatcaattacctgtgatccggatcca
aggaagcatccatctcagactggggttcagcctactcagtctggtagacctaccacatta
gatcctctgcataatgactcatctacactgccaaaaaacactcaaggaaaggctggacaa
ccaccacaaaggctttctactcaaccacccgcttcctctaacattagcagttcctcagct
ccgaccttaaatactgccaaaaataataaactaaatccaatttcaaaccttttaagctca
ttggttgcaaagggtttgatatctgcagaaacagaatcaccaactatggtaccaagtgag
gttccgaagggatccaaagatcaaactgaaataattaccaccagttgttctttaccagtt
acatcaatttctggttctgcagctgtcccagtatcgtcttccggagatgaggtagattct
gctacaaaaacctctctcgcctcacctcaatcaactagcacggaaatcagaaatcttgtt
ggctttgattttagacctaatgtaattcgagaattccacccatcagtaattagggaatta
tgggatgatttccctcataattgcaaagtttgtggtattaagcttaaacaagaagaactg
tttaatagacatttggagtggcatgccacaagagaacatggtccaattaaggcatcaaga
agttggtatgctgagtctagtgactggattgctggcaaggcagaatattcatctgagtct
gggtttaatgattctgttgatgtacacgaacaaaaaacagacagcagtcaattggatacg
atggttctagcagatgaaaaccagtgtctgtgtgtattgtgtggcgagctatttgaagat
gcgtactgtcatgaaaggaacgagtggatgttcaaaggggccgtttacatgaactattca
gatgtcaactgtgagatggaaagtagaaatgtgggtcccatcattcatgccaaatgctta
tcagagaactcaatcgtcaccaatttggcctttctacaaaaacagattgcataa
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