Glycine max (soybean): 102662801
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Entry
102662801 CDS
T01710
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
KO
K14829
pre-rRNA-processing protein IPI3
Organism
gmx
Glycine max (soybean)
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gmx03009
]
102662801
Ribosome biogenesis [BR:
gmx03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
102662801
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
WDR55
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
Beta-prop_SCAP
WD40_RFWD3
WD40_MABP1-WDR62_1st
NBCH_WD40
PEP5_VPS11_N
Beta-prop_VPS8
Beta-prop_IFT140_1st
VPS8_N
Beta-prop_IP5PC_F
WD40_MABP1-WDR62_2nd
Beta-prop_SPT8
ANAPC4_WD40
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_Vps41
WD40_like
Beta-prop_IFT122_1st
Motif
Other DBs
NCBI-GeneID:
102662801
NCBI-ProteinID:
XP_025984427
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Position
5:4272051..4279414
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AA seq
475 aa
AA seq
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MTVVEEREAVLACSDKNMKIGATMWDLETGEKLFHIPTCASPPFGFLCLRNRFLVASQSN
KLGSVGDGAIAIWSFNKPQQPLLNYTVEAIGPLSCTNDGIYLVGGALSGKAYLWDVTNGK
LLKTWKAHNKSLNCMLFSDDNSLLFSSSSDGMICVWPMISLLDVEDTRSSPPPLHCFLGH
MSSITGLLTTPNSYLSRLVSSSLDGTCKVWDFISGMLVQTHVYPFAITSITLHQREMLLF
CGTEKGTIIVNKLDVGQEEGFSIVNESQQPLELKGHNGAITALTSTRACLISASEDCSIC
AWDIFSWKRIQRFSIQKGKVTNLVIVSRSSLLPTPNHRRVPNQYHVSQLEKYPQLVNSFK
GTTTLLSLRPLYTGIQTDIDMESIGLLKQKISSSQKGDLPMAMTMQMKMEANVESRVLAT
NMAKHVMVINKQLQSKLLGMMQHRLFRTNNINLPKASRKKFKIQSLMQEEESHKP
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgacggtggtggaagaaagagaggcagtgttggcatgtagtgacaagaacatgaagata
ggggcgacgatgtgggacttggaaacaggagaaaaattgtttcacataccaacatgtgcc
tcgccaccttttggcttcttgtgcttgagaaaccgtttccttgtggcgtctcaatcaaac
aaactcgggtctgttggcgacggagccattgcaatttggtctttcaacaagcctcaacaa
ccacttttgaattacacggtggaggctattgggccactttcttgtacaaatgatggcata
tacctcgtgggaggagctttgtccggaaaggcatatctttgggatgtgaccaatggaaaa
ttactgaagacttggaaggctcataataaatctttaaattgcatgctattttcagatgac
aattctcttcttttttctagttcatctgatggaatgatatgtgtttggcccatgattagt
ctattagatgtagaagatacaagaagctcgccacctccattgcattgttttttagggcac
atgtcttccataactgggcttttaactacaccaaatagttacttatcaagattagtatca
agctcccttgatggcacatgcaaggtttgggattttatctctggaatgcttgtgcaaact
cacgtttatccttttgcaataacttccatcacccttcaccaaagggaaatgctcttattt
tgcggaacagaaaagggaacaataattgttaacaagcttgatgttggtcaggaagaaggt
ttttccattgtcaatgaaagccaacaaccacttgaattgaaaggacacaatggagccatt
actgccttaacctctactcgagcatgcttaatatctgcctcagaagattgttctatctgt
gcttgggatatctttagttggaaaaggattcaaaggttcagtattcaaaaagggaaagta
actaatcttgtgatagtttcacggtcctcgttgctccctacaccaaaccaccgaagagtc
cccaatcagtatcatgtttctcagcttgaaaagtatccccagctagtcaactcatttaag
ggaactaccactcttctttccttacgtccactctacacaggaattcaaaccgacattgat
atggaaagtattggtttattgaaacaaaagatttctagttcacagaaaggagatctgcct
atggccatgacaatgcaaatgaaaatggaagcaaatgtagagagtcgagtattggcgaca
aacatggcaaagcatgttatggtgataaacaaacaattgcagtcaaaattattgggtatg
atgcaacacagattgtttcgtacaaacaacattaacttgccaaaagctagtagaaaaaag
ttcaaaattcaaagtctaatgcaggaagaggaaagtcataaaccttag
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