Glycine max (soybean): 547940
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Entry
547940 CDS
T01710
Name
(RefSeq) squalene synthase
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
gmx
Glycine max (soybean)
Pathway
gmx00100
Steroid biosynthesis
gmx00909
Sesquiterpenoid and triterpenoid biosynthesis
gmx01100
Metabolic pathways
gmx01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
547940
09109 Metabolism of terpenoids and polyketides
00909 Sesquiterpenoid and triterpenoid biosynthesis
547940
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
gmx01006
]
547940
Enzymes [BR:
gmx01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
547940
Prenyltransferases [BR:
gmx01006
]
Terpene biosynthesis
Squalene/phytoene synthase
547940
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Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
DUF2172
Motif
Other DBs
NCBI-GeneID:
547940
NCBI-ProteinID:
NP_001236365
UniProt:
O22107
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Position
12:complement(2744806..2751016)
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AA seq
413 aa
AA seq
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MGSLGAILKHPDDFYPLLKLKMAARNAEKQIPPEPHWAFCYTMLHKVSRSFALVIQQLGT
ELRNAVCIFYLVLRALDTVEDDTSIETDVKVPILIAFHRHIYDRDWHFSCGTKEYKVLMD
QFHHVSTAFLELGKNYQEAIEDITKRMGAGMAKFICKEVETIDDYDEYCHYVAGLVGLGL
SKLFHASGSEDLAPDDLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRQIWSEYVNKL
EDLKYEENSVKAVQCLNDMVTNALMHAEDCLKYMAALRDPPIFRFCAIPQIMAIGTLALC
YNNIEVFRGVVKMRRGLTAKVIDRTKTMADVYGAFFDFASMLEPKVDKNDPNATKTLSRL
EAIQKTCRESGLLSKRKSYIVNDESGYGSTMIVILVIMVSIIFAYLSANHHNS
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgggaagtttgggagcgattctgaaacatccagatgacttttaccctctgctgaagctg
aaaatggcggcgaggaacgccgagaagcagatcccgccggagccgcactgggcgttctgc
tacacaatgctccacaaggtttctcgaagtttcgccctcgtcattcagcaactcggcacc
gagcttcgcaacgccgtttgcatattttatttggttctgcgagctctcgacaccgttgag
gatgatactagcatagaaacagatgtcaaggtgccaatactgatagcctttcaccgtcat
atttatgatcgtgattggcacttttcatgtggcacaaaggagtacaaagttctaatggac
cagtttcatcatgtttcaactgcttttctggaacttggaaagaactaccaggaagcaatt
gaggacattaccaaaagaatgggtgctggaatggccaaatttatttgcaaggaggtagaa
acaattgatgactatgatgaatattgtcactatgtggcgggacttgttgggctgggttta
tcaaagcttttccatgcgtctggttcagaagatctggctccagatgacctttccaattca
atgggcttgtttctacagaaaacaaacattattcgagattatctggaagacatcaatgag
atccccaagtcacgcatgttttggccacgacagatttggagtgaatatgttaacaaactt
gaggatttgaaatatgaggagaactctgttaaggcagtgcaatgcttaaatgacatggtc
actaatgctctgatgcatgctgaagattgcttaaaatacatggctgctttacgtgacccg
cctatatttcgcttttgtgctataccccagataatggcaattggaacacttgcattatgc
tacaacaacattgaggtcttcagaggtgtagttaaaatgaggcgaggtttaactgccaaa
gtgattgaccgaacaaagactatggctgatgtctacggtgctttttttgattttgcttct
atgttggagcccaaggttgacaaaaacgatcccaatgcaacaaaaacattgagcaggctg
gaagctatacagaaaacttgcagagaatctggtctcttaagtaaaaggaaatcttacatt
gtgaatgatgaaagtggatatggctcaaccatgattgtcatattggtcatcatggtttcc
atcatttttgcttatctgtctgctaaccaccataatagctag
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