| Entry |
|
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| Org code |
osa
|
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| Name |
Oryza sativa ssp. japonica cultivar Nipponbare (Japanese rice) |
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| Category |
Reference genome
|
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| Annotation |
yes |
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| Taxonomy |
|
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| Lineage |
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa |
|---|
| Brite |
KEGG organisms [BR:br08601]
KEGG organisms in the NCBI taxonomy [BR:br08610]
KEGG organisms in taxonomic ranks [BR:br08611]
KEGG organisms: plants [BR:br08613]
|
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| Data source |
|
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| Original DB |
|
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| Keywords |
Photosynthesis
|
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| Chromosome |
1 |
|---|
| Sequence |
|
|---|
| Length |
43929697 |
|---|
| Chromosome |
2 |
|---|
| Sequence |
|
|---|
| Length |
36447916 |
|---|
| Chromosome |
3 |
|---|
| Sequence |
|
|---|
| Length |
37399924 |
|---|
| Chromosome |
4 |
|---|
| Sequence |
|
|---|
| Length |
36078568 |
|---|
| Chromosome |
5 |
|---|
| Sequence |
|
|---|
| Length |
30400764 |
|---|
| Chromosome |
6 |
|---|
| Sequence |
|
|---|
| Length |
32122276 |
|---|
| Chromosome |
7 |
|---|
| Sequence |
|
|---|
| Length |
29936421 |
|---|
| Chromosome |
8 |
|---|
| Sequence |
|
|---|
| Length |
28605474 |
|---|
| Chromosome |
9 |
|---|
| Sequence |
|
|---|
| Length |
27474823 |
|---|
| Chromosome |
10 |
|---|
| Sequence |
|
|---|
| Length |
23931887 |
|---|
| Chromosome |
11 |
|---|
| Sequence |
|
|---|
| Length |
31111469 |
|---|
| Chromosome |
12 |
|---|
| Sequence |
|
|---|
| Length |
28271460 |
|---|
| Chromosome |
MT |
|---|
| Sequence |
|
|---|
| Length |
490520 |
|---|
| Chromosome |
Pltd; Circular |
|---|
| Sequence |
|
|---|
| Length |
134525 |
|---|
| Plasmid |
B1; Circular |
|---|
| Sequence |
|
|---|
| Length |
2135 |
|---|
| Statistics |
Number of nucleotides: 386337859
Number of protein genes: 29429
Number of RNA genes: 3149
|
|---|
| Created |
2003
|
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| Reference |
|
|---|
| Authors |
Shang L, He W, Wang T, Yang Y, Xu Q, Zhao X, Yang L, Zhang H, Li X, Lv Y, et al. |
|---|
| Title |
A complete assembly of the rice Nipponbare reference genome. |
|---|
| Journal |
|
|---|
| Reference |
|
|---|
| Authors |
International Rice Genome Sequencing Project. |
|---|
| Title |
The map-based sequence of the rice genome. |
|---|
| Journal |
|
|---|
| Reference |
|
|---|
| Authors |
Sasaki T, Matsumoto T, Yamamoto K, Sakata K, Baba T, Katayose Y, Wu J, Niimura Y, Cheng Z, Nagamura Y, et al. |
|---|
| Title |
The genome sequence and structure of rice chromosome 1. |
|---|
| Journal |
|
|---|
| Reference |
|
|---|
| Authors |
Buell CR, Yuan Q, Ouyang S, Liu J, Zhu W, Wang A, Maiti R, Haas B, Wortman J, Pertea M, et al. |
|---|
| Title |
Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species. |
|---|
| Journal |
|
|---|
| Reference |
|
|---|
| Authors |
Feng Q, Zhang Y, Hao P, Wang S, Fu G, Huang Y, Li Y, Zhu J, Liu Y, Hu X, et al. |
|---|
| Title |
Sequence and analysis of rice chromosome 4. |
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| Journal |
|
|---|
| Reference |
|
|---|
| Authors |
Rice Chromosome 10 Sequencing Consortium. |
|---|
| Title |
In-depth view of structure, activity, and evolution of rice chromosome 10. |
|---|
| Journal |
|
|---|
| Reference |
|
|---|
| Authors |
Rice Chromosomes 11 and 12 Sequencing Consortia. |
|---|
| Title |
The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. |
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| Journal |
|
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| LinkDB |
|
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