| Entry |
|
| Org code |
osa
|
| Name |
Oryza sativa ssp. japonica cultivar Nipponbare (Japanese rice) |
| Category |
Reference genome
|
| Annotation |
yes |
| Taxonomy |
|
| Lineage |
Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa |
| Brite |
KEGG organisms [BR:br08601]
KEGG organisms in the NCBI taxonomy [BR:br08610]
KEGG organisms in taxonomic ranks [BR:br08611]
KEGG organisms: plants [BR:br08613]
|
| Data source |
|
| Keywords |
Photosynthesis
|
| Chromosome |
|
| Plasmid |
|
| Statistics |
Number of protein genes: 29429
Number of RNA genes: 3149
|
| Created |
2003
|
| Reference |
|
| Authors |
Shang L, He W, Wang T, Yang Y, Xu Q, Zhao X, Yang L, Zhang H, Li X, Lv Y, et al. |
| Title |
A complete assembly of the rice Nipponbare reference genome. |
| Journal |
|
| Reference |
|
| Authors |
International Rice Genome Sequencing Project. |
| Title |
The map-based sequence of the rice genome. |
| Journal |
|
| Reference |
|
| Authors |
Sasaki T, Matsumoto T, Yamamoto K, Sakata K, Baba T, Katayose Y, Wu J, Niimura Y, Cheng Z, Nagamura Y, et al. |
| Title |
The genome sequence and structure of rice chromosome 1. |
| Journal |
|
| Reference |
|
| Authors |
Buell CR, Yuan Q, Ouyang S, Liu J, Zhu W, Wang A, Maiti R, Haas B, Wortman J, Pertea M, et al. |
| Title |
Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species. |
| Journal |
|
| Reference |
|
| Authors |
Feng Q, Zhang Y, Hao P, Wang S, Fu G, Huang Y, Li Y, Zhu J, Liu Y, Hu X, et al. |
| Title |
Sequence and analysis of rice chromosome 4. |
| Journal |
|
| Reference |
|
| Authors |
Rice Chromosome 10 Sequencing Consortium. |
| Title |
In-depth view of structure, activity, and evolution of rice chromosome 10. |
| Journal |
|
| Reference |
|
| Authors |
Rice Chromosomes 11 and 12 Sequencing Consortia. |
| Title |
The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. |
| Journal |
|
| LinkDB |
|