Glutamicibacter nicotianae: QQS42_06215
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Entry
QQS42_06215 CDS
T09135
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
gnc
Glutamicibacter nicotianae
Brite
KEGG Orthology (KO) [BR:
gnc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gnc03019
]
QQS42_06215 (hrpA)
Enzymes [BR:
gnc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QQS42_06215 (hrpA)
Messenger RNA biogenesis [BR:
gnc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
QQS42_06215 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_19
HA2_N
AAA_22
nSTAND3
ABC_tran
SLFN-g3_helicase
T2SSE
ResIII
AAA_30
PhoH
AAA_16
UvrD-helicase
AAA_23
Motif
Other DBs
NCBI-ProteinID:
WIV45190
LinkDB
All DBs
Position
complement(1304301..1308281)
Genome browser
AA seq
1326 aa
AA seq
DB search
MALSITYPEALPVSARREDILDAVRENQVVVIAGETGSGKTTQLPKMLIELGLAEQGMIG
HTQPRRLAARTVAERIAEEMGTTIGEEVGFHVRFTGEVSRKTKLKVMTDGILLAEIQRDK
LLKKYSAIIIDEAHERSLNIDFLLGYLKQIMPKRPDLKIIITSATIDPQRFAAHFGKQDA
KGELVPAPILEVSGRTFPVELRYRPLQADQPMDADEAAENTLEEERDPLDAVTDAVKELS
GEAPGDILIFFSGEREIRDAAEALRAMVTANKRLPRYEVLPLFARLSLAEQHRVFHPGGA
PRIILATNVAETSLTVPGIKYVIDTGTARISRYSHRTKVQRLPIERVSQASANQRLGRCG
RVSEGIAIRLYSQEDYNSRPEFTDPEILRTNLASVILQMISMGVVASAAEVASFPFVQPP
EAKAITDGVNLLRELGALGQDKSATLTEVGRNLAQLPLDVRLGRMIVESAQRSVAKEVMV
LAAGLSIQDPRERPSEETGQRERATELHKRFADGKSDFIALLNLWAYLQEQQKELSSSAF
RRLCKAEFINYLRVREWQDLFTQLRQLAKPLGITVAAAPIEPAANEDEVHKSLLSGLLGH
IGLYDERKRDYQGARGTRFAIFPGSGLFKKSPTWVMSAELVETSRLWARTNAAIDPAWVE
ELAPHLLKRTYSEPHWSKRNGSVMGYEKVTLFGLPIVPRRQFHYWRVDKDLARELFIRHA
LVEGDWRTHHKFFAKNRALLEEVEELETRMRRHDLRISDEDLFAFYDARVGAEVYSERHF
DRWWKKARAADPALLDFDPEALLAETDAVDETAFPTTWKLGGIHLPLSYEYNPAASAGEG
DGVSITVPVVFLNQLDPARFAWLIPGLRHELLTALIRSMPKAIRKNFVPAPDVASKALGM
LEADFDPDTDELAESLALVLRRLRGIVVDPASFDFAALPAHLRFGFTITDGSGKVLGRGD
DLAALQYKFAAANRAALASGVNSPGAAAPGAAGKPGTPGAMASSSKRQKKGAKAAGSAAA
GSAATGAWDQRGLDHWPQLESAGETLGDTLPQKVSTTVMGQQITAYPGLLDTGDKVDLTV
FRTQAERDAAHRTGVIRLLMLRLPPAAKFVISHLKNAEKLVFTQNPHGSIEKLIADCTMA
AVDQLVPERLPMNRAEFEALFETVRAEQIDTVFTITAIVAKVFGSSTRIAKDVKNTKSLA
MFAAVSDIRSQLEQLIYPGFIAATGAPHLMRLPRYLQGIELRLEKLRGGAVTRDGQALAI
IQKLEDEYDAALDKVPEGARVPAGLAQVKWMLEEMRISLFAQELGTAYTVSEKRIRKAIK
DSLAQL
NT seq
3981 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcagcattacgtatcccgaagcacttcccgtctcagcccgccgagaggacatc
ctcgacgcggtgcgcgaaaaccaggtagtggtcatcgccggcgaaaccggttcgggcaag
accacccagcttcccaagatgctcatcgaactcggcctggccgagcagggcatgatcggg
cacacccagccgcgccgcctggccgcgcgcaccgtggccgagcgcatcgccgaggagatg
ggcacgaccatcggcgaggaagtcggcttccacgtgcgcttcaccggcgaggtctcgcgc
aagaccaagctgaaggtgatgaccgacggcatcctgctggccgagatccagcgcgacaag
ctgctgaagaagtactcggcgatcatcatcgacgaagcccacgagcgcagcctgaacatc
gacttcctgctcggctacctcaagcagatcatgcccaagcgcccggatttgaagatcatc
atcacctccgccaccatcgacccgcagcgcttcgccgcgcacttcggcaaacaggatgcc
aaaggcgaactggtccctgccccgatcctggaagtttccgggcgcaccttcccggtggag
ctgcgctatcggccgctgcaggccgatcagccgatggacgccgacgaggcggcggagaac
accctggaggaagagcgcgacccgctggatgcggtgaccgacgcggtcaaggagctgagc
ggcgaagcgccgggcgacatcctgatcttcttctccggcgagcgcgagatccgcgatgcc
gccgaagccttgcgcgcgatggtcaccgccaacaagcgcctgccgcgctatgaggtgctc
cccttgttcgcccggctgtcgctggccgagcagcaccgggtcttccaccccggcggcgca
ccgcgcatcatcctggccaccaacgtggcggagacatcgttgaccgtgccgggcatcaag
tacgtgatcgataccggcaccgcccgcatttcgcgctactcgcaccgcaccaaggtgcag
cgcctgccgatcgagcgcgtctcgcaggccagcgccaaccagcgcttgggccgctgcggc
cgcgtctccgagggcatcgccatccgcctgtactcccaggaggactacaactcccgacct
gaattcaccgacccggaaatcctgcgcaccaacctggccagcgtgatcctgcagatgatc
tccatgggcgtggtggcctcggccgccgaggtcgccagcttcccgttcgtccagccgccc
gaagccaaggcgatcaccgatggcgtgaatctgctgcgcgagctcggggcgctgggccag
gacaagtcggccacgctcaccgaggtcggccggaatctggcccagctgccgctggatgtg
cgcctgggccggatgatcgtcgaatccgcgcagcgctcggtcgccaaggaagtgatggtg
ctcgccgccgggctgagcatccaggacccgcgcgagcggcccagcgaggagaccgggcag
cgcgagcgcgccaccgagctgcacaagcgcttcgccgacggcaagtccgacttcatcgcg
ctgctgaatctgtgggcctatctgcaggagcagcagaaggaactgtcctcctcggccttc
cgccggctgtgcaaggccgagttcatcaactacctgcgcgtgcgcgagtggcaggatttg
ttcacccagctgcgccagctggccaagccgctgggcatcaccgtcgcggccgccccgatc
gagccggcagccaacgaggacgaggtgcacaagtcgctgctctccggcctgctcgggcac
atcgggctctatgacgagcgcaagcgcgactaccagggcgcacgcggcacccgcttcgcg
atcttccccggctcgggcctgttcaagaagtccccgacctgggtgatgtccgccgagctg
gtggagacctcgcggctgtgggcgcgcaccaatgcggccatcgaccccgcctgggtggag
gagctcgccccgcatttgctcaagcgcacctattcggagccgcactggtccaagcgcaac
ggctcggtgatgggctacgagaaggtcacgctcttcgggctgccgatcgtcccccgccgc
cagttccactactggcgggtggacaaggacctggcccgcgagctgttcatccgccatgcg
ctggttgagggcgattggcgcacccaccacaagttcttcgcgaagaaccgcgcgctgctc
gaggaagtcgaggagctggaaacccgcatgcgccgccacgacctgcgcatctcggacgag
gacctgttcgcgttctacgatgcccgggtgggtgccgaggtgtactccgagcggcacttc
gaccgctggtggaagaaggcccgcgccgccgacccggcgctgctggacttcgaccccgag
gcgctgctggccgaaacggacgcggtggacgagaccgcgttcccgaccacctggaagctc
ggcggcatccacctgccgctgtcctacgagtacaacccggcagcatccgccggcgagggc
gatggcgtgtcgatcaccgtgccggtggtgttcctcaaccagctcgatcctgcccgcttc
gcctggctgatcccggggctgcgccacgagctgctcaccgcgctgatccgctcgatgccc
aaggcgatccgcaagaacttcgtgcccgccccggatgtggcgtccaaggcgctggggatg
ctggaggcggacttcgatccggacaccgacgagctggccgaatcgctcgccctggtgctg
cgccggctgcgcggcatcgtcgtcgaccccgcctccttcgatttcgccgcgctgcctgcg
cacctgcgcttcggcttcacgattaccgacggctcgggcaaggtgctcggccgcggggac
gatctggctgcgctgcagtacaagttcgccgccgccaaccgcgccgcactggccagcggg
gtcaactcccccggggcggccgcgccgggcgcagccggcaagcccgggacccctggggcg
atggcttcctcctcgaagcggcagaagaagggagccaaggccgccggctccgcggccgct
ggctccgctgccaccggggcctgggaccagcgcgggctggatcactggccgcagctggaa
tccgctggcgagaccctgggcgatacgctgccgcagaaggtgagcaccaccgtgatgggc
cagcagattaccgcctacccggggttgctggataccggggacaaggtggacctgacggtc
ttccgcacccaggccgaacgcgacgcggcgcaccgcaccggcgtgatccggctgctgatg
ctgcgcctgccgccagcagcgaagttcgtgatctcgcacctgaagaacgccgagaagctg
gtgttcacgcagaacccgcacggctccatcgagaagctgatcgccgactgcaccatggca
gcggtggaccagctggtgcccgagcggctgccgatgaaccgcgccgaattcgaggcgctg
ttcgaaaccgtgcgcgccgagcagatcgatacggtcttcaccatcaccgcgatcgtggcg
aaggtgttcggctcctccacccgcatcgccaaggatgtgaagaacaccaagtcgctggcg
atgttcgcggcggtgagcgatatccgctcgcaattggagcagctgatctacccgggcttc
atcgccgctaccggcgcgccgcacctgatgcgcctgccacgctacctgcagggcatcgaa
ctgcgcttggagaagttgcgcggcggtgcggtcacccgcgacgggcaggctttggcgatc
atccagaagctggaggacgaatacgatgccgcgctggacaaggtgcccgagggcgcccgg
gtgccggccggcttggcccaggtgaagtggatgctggaggaaatgcgcatctcgctgttc
gcccaggagctgggcaccgcctacacggtcagcgagaagcgcatccgcaaggcgatcaag
gattcgctggcgcagctatag
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