Brumicola nitratireducens: GNIT_0979
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Entry
GNIT_0979 CDS
T01632
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
gni
Brumicola nitratireducens
Brite
KEGG Orthology (KO) [BR:
gni00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gni03009
]
GNIT_0979 (srmB)
Enzymes [BR:
gni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GNIT_0979 (srmB)
Ribosome biogenesis [BR:
gni03009
]
Prokaryotic type
rRNA helicases
GNIT_0979 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Utp25_C
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
AEP29116
UniProt:
G4QJZ4
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All DBs
Position
complement(1069199..1070470)
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AA seq
423 aa
AA seq
DB search
MFAQLDLDDELCRAVAEMGYERPTSIQSLVIPHAMEGKDILADAPTGTGKTAAFLLPVCQ
YLLDYPRKDDSSTRALVLVPTRELANQVYEQAVAITKFTHLTCGVITGGINYGTDRETLN
AKVDILVATPGRLFEHIEQESFDCRDIESLILDEADRMLDMGFSSIVHQIAGEARWRKQS
MLFSATLEGKGVRNFAEELLKDPVTLSADSSRKEKNKIIQWYHLADDLQHKNAILVHHLL
NTIESCIVFVKTRERLHNLKDFLASQKFSVTYLQGEMPQDKRNAALASFKAGEVKILIAT
DVAARGIDVQDISHVINYDMPRGSDIYVHRIGRTGRAGAKGTAISIVEAHDFEKVGKVER
YTKEPFKARVIDGLRPKNKPPLVVRKKKVKLTGKAKKAKAKSKAKTKFKKKTTRPSSPKS
KEA
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcacaattagatttagatgacgagctctgcagagccgtcgccgaaatgggctat
gaacgcccaaccagtattcagtctttggtcattcctcatgcaatggaaggtaaagatata
ctcgctgatgctccaacgggcaccggcaaaactgcggcattcttgttgcctgtttgccaa
tatttacttgattatccgcgaaaagacgacagttcaacgagagcgcttgtattggttcct
accagagaactagcaaatcaagtatatgaacaagccgtcgctatcactaaatttacgcat
ttgacctgtggtgtcatcactggtggcattaactacggtaccgatcgtgaaacgctaaac
gcaaaggtcgacattctagtggcaacaccgggtcgattgtttgagcatattgaacaagaa
agctttgactgccgtgacattgaatcactcatattagatgaagcagaccgcatgttagac
atgggcttttcatccattgtccatcaaattgcaggggaagctaggtggcgtaaacaaagc
atgttgttttctgcaacgctggaagggaaaggcgtacgaaatttcgctgaggaactttta
aaagatcccgttacactttctgcagactcatcaagaaaagaaaagaacaaaattattcag
tggtatcacttagctgacgacttacagcacaaaaatgccatattagtgcatcatttactc
aataccattgagtcttgcatcgtttttgtaaaaacgcgagaacgcttgcataacctaaaa
gattttttggctagccaaaaatttagcgtaacttatttgcaaggcgaaatgccgcaagat
aagcgcaacgccgcactcgcgagctttaaagccggtgaagtgaaaattctgatcgctacc
gatgtggcggcgagaggcattgatgttcaggatattagtcatgttattaactatgacatg
cctcgtggttcagatatttatgtgcatcgcataggccgaacgggccgagcgggcgcaaaa
ggcacagcaatatcgattgttgaagcgcatgactttgaaaaagtgggaaaagtagagcgt
tacaccaaagagccatttaaagctcgcgtcattgatggtttacgtccaaaaaataaacca
ccgcttgtggtgagaaagaaaaaagtaaaattaacaggtaaagcaaagaaagcaaaagct
aaatctaaggcgaagaccaagtttaaaaagaagacgactagaccctcatcacctaaatca
aaagaggcctaa
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