Brumicola nitratireducens: GNIT_2888
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Entry
GNIT_2888 CDS
T01632
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gni
Brumicola nitratireducens
Pathway
gni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GNIT_2888 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gni03019
]
GNIT_2888 (deaD)
03009 Ribosome biogenesis [BR:
gni03009
]
GNIT_2888 (deaD)
Enzymes [BR:
gni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GNIT_2888 (deaD)
Messenger RNA biogenesis [BR:
gni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GNIT_2888 (deaD)
Ribosome biogenesis [BR:
gni03009
]
Prokaryotic type
rRNA helicases
GNIT_2888 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEP30985
UniProt:
G4QMN3
LinkDB
All DBs
Position
3197050..3198804
Genome browser
AA seq
584 aa
AA seq
DB search
MTDTVDVTFKDLNLPTQLLQALEKVGYEKPSPIQAKSIPLLLAGHDLLGQAQTGTGKTAA
FALPMLANIDPDENFTQLLVLAPTRELAIQVAEAFQVYASFSKKIRVLPVYGGQSYDNQI
RQLKRGVQVVVGTPGRIIDHIKRKTLKLDKLKFLVLDEADEMLRMGFIDDVELILSHAPA
ERQTALFSATMPDAIKKITKRYLKNPEHVKIESTVSSASMIRQRYCQVAGHHKLEALTRI
MEVEEFDGMIIFVRTKTATVELADKLTARGHVVEPLNGDIPQNSRERTVEKLKRGDIDIL
VATDVVARGLDVERVSHVINYDIPYDTESYVHRIGRTGRAGRTGDAILFISHREKRLLFA
IEKATKQRIENMEIPSISQLNESRLVRFKQSIIEAMSDESIESYIPIVESIMEETEASPD
VIMAALAKVAQGDEPLLLKESDRPDLHSKPTFNERNDSAGRGDRDNGRRQGRNERTERGK
SDRNDRKPRVPRGNSTPDEGMQRFRIEVGHTHGAKPGNIVGAIANEANISSKNIGAIEIY
DNFTTVDLPKGMPNEMKETLSKTRVAGQRLNIREWSDTPPKRKK
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacactgtcgatgttacatttaaagatttaaatcttccaacgcaattattacaa
gcgttagaaaaagtaggctatgaaaagccgtctccaattcaagccaagagtattccactt
ttactcgctggtcacgaccttttgggccaagctcaaacaggtacgggcaaaacagctgcg
tttgcactaccaatgctagctaatattgatcccgacgaaaactttacgcaactattggta
ctagcgccaacgcgcgaacttgcaattcaagttgcagaagcgtttcaggtttatgccagc
ttttcgaagaaaattcgcgtactgccggtatacggtggtcagtcttacgataaccagatc
cgtcagctaaagcgtggcgtgcaggttgttgttggaacgccgggtcgaattatcgatcac
attaagcgtaaaacactaaaactagataaacttaaatttctagtgctagatgaagccgat
gaaatgctaagaatgggctttatcgatgacgttgaacttattctaagtcatgcacctgca
gagcgccaaacggctttattctctgcaacaatgcctgatgcgattaaaaagataacaaag
cgttatttgaagaatccagaacatgtgaaaatcgagtcgactgtttcgtctgcaagcatg
ataagacagcgttattgccaagttgctggtcaccataaactagaagcattaactcgaatc
atggaagttgaagaattcgacggcatgattattttcgtacgcacgaaaactgctacggtc
gaattagctgacaaattaacggctcgtggacacgttgtagaacctcttaacggtgatatt
ccgcagaactcacgtgaacgcacagttgaaaaattgaagcgtggtgatatcgacatactg
gttgcaacggatgttgttgcccgtggtcttgatgttgagcgtgttagtcatgtaattaac
tacgacattccatacgatacagaatcttacgttcaccgcataggcagaacaggccgtgca
ggaagaactggtgatgcaattttgttcatctctcatcgtgaaaaacgtttgttattcgca
atagagaaagcaacaaagcaacgtattgagaacatggaaattccgtctatttcacaattg
aatgaatcgcgtttagtgcgtttcaagcaaagcattattgaagcgatgagtgacgaatca
attgaatcgtatattccaatcgttgaatcaattatggaagaaactgaagcttctccagat
gtgatcatggctgccttagcaaaagttgcgcaaggtgatgaaccattattgttgaaagag
tctgacagacctgatttgcatagcaaacctacgttcaatgagcgaaatgacagtgctgga
cgcggcgatcgcgacaatggcagaagacaaggtcgcaatgagcgcactgagcgcggcaaa
tctgatcgaaatgacagaaagcctcgcgtacctagaggcaacagtacgccagatgaaggt
atgcagcgtttcagaattgaagtcggccatacacatggtgcgaagccaggaaatatcgtt
ggcgcaattgctaatgaagcgaacatcagtagtaaaaacataggtgccattgaaatctat
gacaactttacaaccgttgatttgccaaagggcatgcccaatgaaatgaaagagacgctg
tctaaaacacgcgtagctggtcaacgcttaaatatacgtgaatggtctgacacaccgcca
aagcgtaaaaaatag
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