Glaciecola nitratireducens: GNIT_3341
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Entry
GNIT_3341 CDS
T01632
Name
(GenBank) AraC family transcriptional regulator
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
gni
Glaciecola nitratireducens
Pathway
gni03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GNIT_3341
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gni03000
]
GNIT_3341
03400 DNA repair and recombination proteins [BR:
gni03400
]
GNIT_3341
Enzymes [BR:
gni01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
GNIT_3341
Transcription factors [BR:
gni03000
]
Prokaryotic type
Helix-turn-helix
AraC family
GNIT_3341
DNA repair and recombination proteins [BR:
gni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
GNIT_3341
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ada_Zn_binding
AlkA_N
HTH_18
HTH_AraC
HTH_23
HTH_11
DUF6233
Motif
Other DBs
NCBI-ProteinID:
AEP31435
UniProt:
G4QN16
LinkDB
All DBs
Position
complement(3727525..3729027)
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AA seq
500 aa
AA seq
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MLNLPIPIIQKARIARDPRFDGLFFIGVKTTGIFCRPICKARMPLEKNVAYYNNAITAMN
AGFRPCLMCRPDSAPGSYAWKGVETTVERGVKLLSAHLSLSIAEIADKLGISTRYFTKLF
EQHLQISPKRYQLLTRLLFAKQLLHESSLPIEQVAQACGFNAAKPLQHHMKLNTGLTPSQ
IRRSNRAKAETEASKVTIHLSYRPPYQWQHIRDFFKLRQIESNEKVENDSICKVLRFGES
RVLFHAVHQPEKNRFEVTFSLTDLRLLKTGIASLKKMLDLNCEPNAIHDALIQAGMPPQN
VLNGLRLPGIIDKFEAGCRAIVGQQVSVKAAIGQLNLLQNTLNKNQKNKGPGSLKNAPHP
DSNQVAFESLGLIGFVTAKQVAEADLSFLKMPNARKETLKAFAQFMLEQPEASIDEWLHI
KGIGAWTVNYVTMRTSDSPDTFLATDLVVKNQIKQLADRQVGVKQELAAPWRSYLTLSLW
NLSNGAPTPSENVKKEALYE
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgttgaacctacctattcctattattcaaaaagcgcgtatcgcgagagatccgcgtttt
gatggattattttttatcggagtaaagacaacaggtattttctgccgtccaatttgcaaa
gcgcgtatgcctttagagaaaaacgtcgcgtattataataatgcgatcactgctatgaat
gctgggtttcgaccttgtttaatgtgtcgtcccgacagtgccccaggttcttatgcttgg
aagggcgttgaaactacggttgaacgcggtgtgaaattgctcagcgcacacctttcacta
agtattgctgaaattgctgataagcttggtattagcacccgctattttaccaagttgttc
gaacagcatttacagatttcgcccaagcgctatcagttacttactcgcttactttttgcc
aagcagttgctgcacgagtcaagtttaccgatagagcaggttgcgcaggcctgtggattc
aatgcagctaagcccttgcagcatcacatgaagctaaatacaggccttacgccaagtcaa
attaggcgctccaacagggcaaaagcagagacagaagcaagtaaggtaacgattcaccta
tcttacaggccgccctatcaatggcagcatattcgagatttttttaaactgagacaaatt
gaatcgaatgaaaaagtagaaaacgatagtatttgcaaagtgcttcgctttggagaaagt
cgcgttttgtttcacgctgtccatcagcctgagaaaaaccgctttgaagttactttctca
ctaacagatttacgtttactcaagaccggcattgcgtccttgaaaaaaatgctagatttg
aactgcgaaccaaacgcaattcatgacgcattaatacaagcaggaatgccaccgcagaat
gttttaaatggccttcgattaccaggcatcatcgataagttcgaggcaggatgtcgagcg
attgtcggacaacaagtcagtgtaaaagccgccatcggacaattaaacctactacaaaac
accctcaacaaaaaccaaaaaaacaaggggccaggttccttgaaaaatgctccgcacccg
gatagcaatcaagtagccttcgaatcgctgggactcattggttttgtcacggcaaaacaa
gttgctgaggcagatttgtcttttttgaaaatgcccaatgctcgcaaggagaccctcaag
gcctttgcgcagtttatgttagaacaacctgaagcaagcatagatgagtggctgcatatt
aaaggcatcggcgcatggaccgttaattacgttacgatgcgcactagcgacagtccagac
acctttttagcaacggacttagtggttaaaaaccaaattaaacaattagccgataggcag
gttggcgtgaaacaggaattggctgccccatggcgaagctaccttactttgagcctttgg
aatttatctaatggtgcgccaactccttcagaaaacgtaaaaaaggaagcgctatatgaa
taa
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