Geomonas nitrogeniifigens: KP003_00565
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Entry
KP003_00565 CDS
T07937
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
gnt
Geomonas nitrogeniifigens
Pathway
gnt03030
DNA replication
gnt03410
Base excision repair
gnt03420
Nucleotide excision repair
gnt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gnt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KP003_00565 (polA)
03410 Base excision repair
KP003_00565 (polA)
03420 Nucleotide excision repair
KP003_00565 (polA)
03440 Homologous recombination
KP003_00565 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gnt03032
]
KP003_00565 (polA)
03400 DNA repair and recombination proteins [BR:
gnt03400
]
KP003_00565 (polA)
Enzymes [BR:
gnt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KP003_00565 (polA)
DNA replication proteins [BR:
gnt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KP003_00565 (polA)
DNA repair and recombination proteins [BR:
gnt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
KP003_00565 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KP003_00565 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_2
KH_DEAH11
HHH_5
ATP1G1_PLM_MAT8
Motif
Other DBs
NCBI-ProteinID:
QXE86935
LinkDB
All DBs
Position
134496..137174
Genome browser
AA seq
892 aa
AA seq
DB search
MTAERETLYLLDGSSYIYRAYFAIRHLSSPNGFPTNALYGFTQMLLKVMKDRAPAHVAVV
FDAGKITFRNELFSAYKATRSAMPEDLAQQIEPIKQMVRAFNIPALELPGWEADDIIGTI
AKKAEAAGLDCVVVTGDKDLMQVVTEHVTLLDTMKDKSFGIPDVIEKFGVEPGRVVDVLA
LWGDTSDNIPGVPGVGEVTAKKLLQEFGSLDELLARASEVKGKTGERLVEFADQARLCRT
LATIDCNVPIEYDIDDFAVTPPDNRRLAALFREYGFATLLKDLTSSPTLSCDRYALVLTE
AELRELVAKLEKAPAFAIDLETTSLNPFEACIVGYAVSCHSHEAYYIPVGHRYLGAPEQL
PEKLVLELLGPLLTDPARKKIGQNLKYDYQVLQLSGVKLAGIWCDTMLAAYLVNPSRNSQ
GLDALALEYLDHRMISYAEVAGSGKCELNFSEVDLDRAGPYSCEDADATFLLHEILLPKV
REQGMEELLFDLEMPLLEILADMELCGVKLDPELMKELSTGFGKQLIELEAKIHDHCGGP
FNINSPKQLGEMLFERMGLAVGKKTKGKTGWSTNVEELERLAEQHEVARLLLQYRSISKL
KSTYTDALPKLVDPRTGRVHTSYNQAVTNTGRLSSSDPNLQNIPVRGAEGRDIRRAFVAE
PGSLILSADYSQIELRVLAHLSGDRVLCEAFASGEDVHRRTAAEVFGMFPELVTPEMRRQ
AKVINFGIIYGQGAFSLAKELGVTAKQAKAFIDNYFERHAGARSFLDSCISEAETCGFVT
TILGRRLQIPEIASKNGNVRAFAQRNATNYPIQGSAADIIKAAMIKVSRRMRDERVASRL
IMQVHDELVFEVPENERELMAELVRSEMEGALPLSVPLKVDLNFGLNWAEAH
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
gtgacggccgagagagaaaccctgtaccttttggacggctcctcctatatctaccgggcc
tatttcgccatccgccacctgagctcccccaacggcttccccaccaacgcgctctacggt
ttcacccagatgctcctgaaggtcatgaaggaccgggctcccgcgcacgtcgccgtggtc
ttcgacgccggcaagatcaccttcagaaacgagctcttctccgcctacaaggcgaccagg
agcgccatgcccgaggacctggcccagcagatcgagccgatcaagcagatggtgcgcgcc
ttcaacatcccggcgctggagcttcccggctgggaggcggacgacatcatcgggaccatc
gccaagaaggccgaggcggcggggctcgactgcgtggtggtcaccggcgacaaggacctg
atgcaggtcgtcaccgagcacgtgacgcttttggacaccatgaaggacaagagcttcggc
atccccgacgtcatcgagaagttcggcgtggagccgggacgggtggtagacgtgctggcg
ctttggggggacacctccgacaacatacctggcgtcccgggggtcggggaggtgacggcc
aagaagctcctgcaggagttcggctcgctggacgagctgctcgcgagggcctccgaggtg
aaggggaagaccggggagcggctggtcgaattcgccgaccaggcccgcctgtgccgcacc
ctggccaccatcgactgcaacgtccccatcgagtacgacatcgacgatttcgcggtgacc
cctccggacaaccgccggctggcagcgctgttccgcgagtacggtttcgccaccttgttg
aaggacctgaccagctcgcccaccctttcctgcgaccgctacgcgctggtgctgaccgag
gccgagctgcgcgagctcgtggcgaagctggaaaaggcgcctgccttcgccatcgacctg
gagacgacgagcctcaacccgttcgaggcctgcatcgtcggctacgcggtcagctgccat
tcccacgaggcctactacatcccggtcgggcaccgctacctgggcgccccggaacagctc
cccgaaaagctggtgctggaactcctgggaccgcttctcaccgaccccgcccgcaagaag
atcggccagaacctgaagtacgactaccaggtgctgcaactttccggcgtgaaactggcc
ggcatctggtgcgacaccatgctggcggcgtacctggtcaacccgtcgcgcaacagccag
gggctcgacgccctggcgcttgagtacctggaccaccgcatgatctcctacgcagaggtg
gcgggcagcggcaagtgcgagctgaacttctccgaggtggacctggaccgcgccggcccc
tactcctgcgaggacgccgacgccaccttcctgctgcacgagatcctgctccccaaggtg
cgcgagcaggggatggaggagctcctcttcgacctcgagatgccgctcctggagatcctg
gcggacatggagctgtgcggcgtgaagctcgacccggagctcatgaaggagctttccacc
gggttcggcaagcagctcatcgagctggaggcgaagatccacgaccactgcggcggcccc
ttcaacataaactcgcccaaacagctgggggagatgcttttcgagcggatggggctcgcg
gtcggcaagaagaccaagggtaagaccggctggtccaccaacgtcgaggagctggagcgg
ctggccgagcagcacgaggtggcgcggctgctgctgcagtaccggagcatctcgaagctt
aagtcgacctacaccgacgccctccccaagctggtcgatcccaggaccgggcgggtgcac
acctcctacaaccaggcggtcaccaacaccggcaggctctcctcgtccgatccgaacctg
cagaacatcccggtgcgcggagcggaggggcgcgacatcaggcgcgccttcgtggccgag
ccgggaagcctgatcctctcggccgactattcccagatcgagctgcgggtgctggcgcac
ctctccggcgaccgtgtcctctgcgaagcgttcgcctccggcgaggacgtccaccgtcgc
accgccgccgaggtcttcggcatgttcccggaactggtcacccccgagatgcggcgccag
gccaaggtgatcaacttcggcatcatctacggccagggggctttttcgctggccaaggaa
ctgggagtcaccgccaagcaggccaaggccttcatcgacaactatttcgaacgccacgcc
ggtgccaggagcttcttggacagctgcatctccgaggccgagacctgcggcttcgtcacc
accatcctggggaggaggctgcagatcccggagatcgccagcaaaaacggcaacgtgcgc
gccttcgcccagagaaacgccaccaactacccgatccagggctcggcggccgacatcatc
aaggcggccatgatcaaggtctcccgccgcatgcgcgacgagcgggtggccagccgcctg
atcatgcaggtgcacgacgaactggtgttcgaggtgcctgaaaacgagcgggagctgatg
gcggagctggtgcgcagcgagatggagggggcgcttcccctctccgtcccgctcaaggta
gacctcaacttcggcctgaactgggccgaggcccactaa
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