Geomonas diazotrophica: KP003_02010
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Entry
KP003_02010 CDS
T07937
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
gnt
Geomonas diazotrophica
Brite
KEGG Orthology (KO) [BR:
gnt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gnt03009
]
KP003_02010 (rimO)
Enzymes [BR:
gnt01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
KP003_02010 (rimO)
Ribosome biogenesis [BR:
gnt03009
]
Prokaryotic type
ribosomal protein modification factors
KP003_02010 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
TRAM
RIM2a_ZnF
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
QXE87203
LinkDB
All DBs
Position
complement(461665..463011)
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AA seq
448 aa
AA seq
DB search
MNQKIKEKVSLVSLGCPKNLVDAEVMLGYLSKDEYEVTTDEMQADIIVVNTCSFIKEAKQ
ESIDTILDLADRKHDARCKLLIVTGCLPQRYQEELAKELPEVDIFIGTGDYPRIAEIVAE
KKGTDAQLCYTGDPNFVYNDELPRLQSSPHYTAYLKIAEGCSNNCSYCVIPSLRGAHRSR
PFATLMAEAKSLVAAGVKELNLIAQDITAYGRDLPEQPSLELLVQELAKLEGLKWIRLLY
AYPDGVRDSLIELIKNEPKVCKYLDLPIQHISDPVLKNMKRRSGEADIRALIAKLRKEIP
DIAIRTSLIVGFPGETNEDFKTLLQFVEETRFDRLGVFCYSREEGTPAAEMPDQVSERVK
RERHKKLMRTQARVSFKHNRTLVDSEEDVLVEGYSEETELLLKGRSSRQAPDVDGQVYIT
AGNANVGDIVRLKITDSSDYDLIGEIIG
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
ttgaaccagaagattaaggaaaaagtgagcctggtgagcctgggctgcccgaagaacctg
gtggatgccgaggtgatgctgggctacctctcaaaggacgagtacgaggtcaccaccgac
gagatgcaggccgatatcatcgtggtgaacacctgctccttcatcaaggaggccaagcag
gagagcatcgacaccatcctcgacctggcggaccgaaagcacgacgcgcgctgcaagctc
ctcatcgtgaccggctgcctgccgcagcgctaccaggaggagctcgccaaggagctcccc
gaggtggacatcttcatcggcaccggcgactacccccgcatcgcggagatcgtcgcggag
aagaaggggaccgacgcccagctctgctacaccggcgaccccaacttcgtctacaacgac
gagttgccgcgcctgcagtcctcgccgcactacacggcctacctgaagatcgcggaaggt
tgctccaacaactgctcatactgcgtgatcccgtccctgcgcggcgcgcaccgctcccgc
cccttcgcgaccctcatggcggaggccaagtccctggtggcggccggggtgaaggagctc
aacctgatcgcccaggacatcaccgcctacggcagggatctcccggagcagccgagcctg
gagctcctggtccaggaactggccaagctcgaggggctcaagtggatcaggctcctctac
gcctatccggacggggtcagggactcgctcatcgagctgatcaagaacgagcccaaggtg
tgcaagtacctcgacctcccgatccagcacatctccgacccggtcctgaagaacatgaag
cgcagaagcggcgaggccgatatccgcgccctgatcgccaagctgcgcaaggagatcccg
gacatcgccatccgaacctccctcatcgtcggcttccccggcgagaccaacgaagacttc
aagacgctcctgcagttcgtcgaggagacccgcttcgaccgtctcggcgtcttctgctac
tcccgcgaggaggggaccccggcggcggagatgccggaccaggtctccgagcgggtcaag
cgcgagcgccacaagaagttgatgcggacccaggcccgcgtctccttcaagcacaaccgt
accctggtggacagcgaggaagacgtgctggtcgaggggtacagcgaggaaaccgagctc
ctcctgaaggggcgttcctcccgtcaggcccccgatgtggacggccaggtgtacataacc
gcaggcaacgccaacgtcggtgacatagtcagattgaagatcactgactcgtctgattac
gacctgattggggagatcatcggctag
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