Geomonas diazotrophica: KP003_02430
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Entry
KP003_02430 CDS
T07937
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gnt
Geomonas diazotrophica
Pathway
gnt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gnt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KP003_02430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gnt03019
]
KP003_02430
03009 Ribosome biogenesis [BR:
gnt03009
]
KP003_02430
Enzymes [BR:
gnt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KP003_02430
Messenger RNA biogenesis [BR:
gnt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KP003_02430
Ribosome biogenesis [BR:
gnt03009
]
Prokaryotic type
rRNA processing factors
KP003_02430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QXE87282
LinkDB
All DBs
Position
557345..560149
Genome browser
AA seq
934 aa
AA seq
DB search
MSKKMLINALHAEEARVAIVEDGRLVDLDVEIAGNEQTRGNIYKGVVVRVEPGLQAAFVD
IGLKKLGFLQMGELHPENWKWRDDIPEEQRHRRPRIQEVLRRGQELIVQVEKGERDNKGS
ALTTYISLPGRYMVLMPGSDSAGISRKVEAEGERKKLKEIIAEMTIPQGYGYIIRTEAMG
RTRDELQKDLDSLIALYEGIRERGAGMKGAGMAYQESALIIRTIRDYFSSDIDEVLVDSK
DVFKDVRDALKEIDPDFEKLVKMHQEKRPIFSRYQLEEQIDLIYEKKVPLKSGGSIFIEP
TEALVSIDVNSGKSTGEKGVEDTAFKTNLEAAEEAARQLRLRDLGGLIVIDFIDMRDRKH
NAEVEKTLKNALKADKARVNVARISEFGLLEMSRQRIRQTLNQASTLECPHCDGRGKVKS
VEAMALSFLRKVHAAAAKGTIGEVVGSLPLEVAYYLLNRKRHELSQIENDYDIEVTVKGK
PSYLLNQMELELIKREKLPQEDLPQEKPFQGKAPAKEEQLAAEPAEGRKKKKRGKKAQEP
EAAQHAEAVPIAVIEEPSGAEHVVTLESEPEEHKKKRRRKRKRGKGGAAEGGAEHAATSG
EAMVELAGGVPAELTEPGAVLEQPAAQDAEQAHAEPGEEVKKKRRRKRRRGKGGHEAAGE
QTPGEAPHAASEVPAAAVSAEAVPAAEGAAPGGEPGEKKPARKRRGRGKGAAADGAPEAA
VASVAAMSAPAEAPAEQRSQASAPAPVEAAKPEKKARTPRKTKAVTETGATPAAPAAAAD
APQEKPAQAKKGRGAKGAATKAPASAPAPAVTETPAPKPKAAKAAKKPKEATETAAPKEA
KAPKQAKEPKAAKAAKEPAEPGKAKAAKGPKQGKAPNGSGTAAPAAETKPAEAVPAKEKA
PAKRARKAAEPAAASEEKPKKPRAPRKKKEETPA
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagaagatgctgatcaatgcgcttcacgctgaagaggcgcgggtggcgatcgtc
gaggacggacgcctggtggacctggatgtcgagatcgccggcaacgaacagacgcgcggc
aatatctacaagggggtggtggtccgcgtagagccggggctgcaggccgccttcgtggac
atcggcctgaaaaagctgggctttcttcagatgggcgagctgcacccggagaactggaaa
tggcgtgacgacatccccgaggagcagcgccaccgccgtccccgcatccaggaggtgctg
agaagggggcaggagctgatcgtccaggtcgagaagggtgagcgcgacaacaagggctcg
gccctcaccacctacatctcgctgccggggcgctacatggtgctgatgccggggagtgac
tcggccggcatttcccgcaaggtggaagccgagggtgagcgcaagaagctcaaggaaatc
atcgccgagatgaccatcccgcaggggtacggctacatcatccgcaccgaggccatgggg
cgcacccgcgacgagttgcaaaaggacctggacagcctgattgccctgtacgaggggatc
cgggagagaggggcggggatgaagggggccggcatggcctaccaggagtccgcgctgatc
atccggaccatccgcgactatttctcctcggacatcgacgaggtcctggtcgacagcaag
gacgtcttcaaggacgtgcgcgacgcgctcaaggagatcgacccggacttcgagaagctg
gtcaagatgcaccaggagaagcgtcccatcttctcccgttaccagttggaggagcagatc
gacctgatctacgagaagaaggtgccgctcaagtcggggggctccatcttcatcgagccc
accgaggccctggtctccatcgacgtcaactccggaaagtccaccggcgagaagggggtc
gaggacaccgcgttcaagaccaacctggaggccgccgaggaggcggcgcgccagttgcgg
ctgcgcgaccttggggggctcatcgtcatcgacttcatcgacatgcgcgacagaaagcat
aacgccgaggtggagaagaccctgaagaacgcgctcaaggcggacaaggcccgggtgaac
gtggcgcgcatctcggagttcgggctcctggagatgtcccgccagcgcatccgccagacc
ctgaaccaggccagcaccctcgagtgtccccactgcgacggtagggggaaggtgaagtcg
gtcgaggcgatggcgctttccttcctgaggaaggtgcatgctgccgccgccaaggggacc
atcggcgaggtggtggggagcctgccgctcgaagtcgcttattacctgctgaaccgcaag
cgtcacgagctctcccagatcgagaacgactacgacatcgaggtgacggtcaaggggaag
ccttcctacttgctgaaccagatggagctcgaactgatcaagcgggagaagctgccgcag
gaggatctgccgcaggaaaaaccgttccaggggaaggccccggccaaggaagagcagctg
gccgccgagccggccgaagggcgcaagaaaaagaagagagggaagaaggcacaggagccg
gaggctgcgcagcacgccgaggcggtgcccatcgcggttatcgaggagccaagcggcgcg
gagcacgtggtgacgctggagtcggagccggaggaacacaagaagaagcgccggcgcaag
agaaagcgcggcaagggtggagctgccgagggtggcgccgagcatgcggccacttccggc
gaggcgatggtcgagctcgctggcggagtccccgccgagcttaccgagccgggcgcggtg
ctggaacagcccgcggcgcaagacgcggagcaggcgcacgctgagccgggcgaagaggtg
aagaagaaacgtcgccgcaagagacggcgcggcaagggagggcacgaagcggctggcgag
cagacgccgggggaggccccgcatgctgccagcgaggtgccggcagccgccgtttcggcg
gaggccgtacccgctgccgagggtgccgctccgggcggagagccaggcgagaagaagccg
gcgcgcaagaggaggggccgcggcaagggagccgcagcagatggtgctcccgaggcggcg
gtcgcaagcgtggctgccatgagtgccccggccgaggcgcctgccgagcagcgttcgcag
gcgagcgcgcccgcgcccgtcgaggctgccaagccggagaagaaggcgcgcaccccgcgc
aagaccaaggccgtcaccgagaccggcgcgacgccggcggcacccgctgccgcagcggac
gcaccgcaggaaaaaccggcacaggcgaaaaagggaaggggcgcaaagggcgccgcaacc
aaggcaccggcatcggctcccgccccggctgtaaccgagacgccggctccgaagcccaag
gctgccaaagctgccaaaaagcccaaggaagccacggaaaccgccgcacccaaggaagcc
aaagcaccgaaacaggcaaaagagcccaaggcggccaaggccgccaaggagcctgcagag
cctggaaaagccaaggcggccaaggggccgaagcaggggaaggcgcccaacggttccggt
acagctgcccccgctgccgagacaaagcccgccgaggcggtgcctgccaaggagaaagct
cccgccaagcgcgccagaaaggccgcagagcccgccgcagcgtcggaggagaagcccaag
aagccgcgggcgccgcgcaagaaaaaggaagagacccctgcctga
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