Geomonas diazotrophica: KP003_06220
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Entry
KP003_06220 CDS
T07937
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
gnt
Geomonas diazotrophica
Pathway
gnt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gnt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KP003_06220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gnt03019
]
KP003_06220
Enzymes [BR:
gnt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KP003_06220
Messenger RNA biogenesis [BR:
gnt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KP003_06220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_11
Utp25_C
AAA_19
CMS1
Motif
Other DBs
NCBI-ProteinID:
QXE87994
LinkDB
All DBs
Position
complement(1433913..1435343)
Genome browser
AA seq
476 aa
AA seq
DB search
MKFSELQLPELVQKGIDETGFTDCTPIQEKALPLALTGKDVAGQAQTGTGKTATFLISIF
TRLLSQQKTGAEHHPRALILAPTRELVVQIEKDAQSLGKYTGFNIQAIYGGVDYMKQRDA
LKAGADIVIGTPGRLIDYLKQKVYSLKDVEALVIDEADRMFDMGFIADLRFILRRLPTYE
KRQNLLFSATLNTRVMELAYEFMNMPEKVSVTPEQMTAERVEQVLYHASRKEKFPLLLGL
LRKMGMERTMIFVNTKREAEYLQDRLNANDFPCKVISGDVEQRKRMKILSDFKAGALPIM
IATDVASRGIHIEGVSHVINYDLPQDCEDYVHRIGRTARAGAEGMAISLADEDGAFYIEA
IQDFIKQKIPTEWAEDDMFVHDYKRTARPPRRTDDKPGGRGGKPGDRGGKPGRGEVRGRG
VKSGPGKEKAEQKEAKPAPVESAPAGESATGDAAAKRKRRRRKPKATTGEQQPEQP
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgaaattttcagagctgcagctgccggaactggtccagaaaggcatcgacgaaaccggc
ttcaccgactgcacaccgatacaggaaaaggcgctgccgcttgccctcaccggcaaggac
gtcgcgggccaggcccagaccggaaccggcaagaccgccacttttcttatctccatcttc
acgaggcttttgagccaacagaaaaccggcgccgagcaccatccccgcgcactgatcctg
gcaccgacccgggaactggtcgtccagatcgagaaggacgcccagtcactcggcaagtac
accggcttcaacatccaggccatctacggcggcgtggactacatgaaacagcgcgacgcg
ctcaaagccggcgcagacatcgtgatcggcacgccgggacgcctgatcgactacctgaag
cagaaggtctactcgctgaaggacgtcgaggccctggtcatagacgaagccgaccgcatg
ttcgacatgggcttcatagccgacctccgctttatcctccggcgcctgccgacctacgag
aaacgccagaacctcctcttctcggccaccctgaacacgcgcgtcatggagctcgcctac
gagttcatgaacatgccggaaaaggtctcggtgacgcccgagcagatgaccgcggagcgc
gtcgagcaggtactctaccacgcctccagaaaagagaagttccccctgctgctcggcctg
ctgcgcaagatgggcatggaacgcaccatgatcttcgtcaacaccaagcgggaggcggaa
tacctgcaggaccgcctgaacgccaacgacttcccctgcaaggtgatctcgggcgacgtg
gagcagagaaagcggatgaagatcctttccgacttcaaggcgggcgcgctccccatcatg
atcgccaccgacgtcgcctcgcgcggcatccacatcgaaggtgtatcgcacgtcatcaac
tacgacctgccccaggactgcgaggactacgtgcaccgcatcggccgcaccgcccgcgcc
ggcgcagaggggatggcgatctcgctggccgacgaggacggcgccttctacatcgaggcg
atccaggatttcatcaagcagaagatcccgaccgaatgggccgaggacgacatgttcgtc
cacgactacaagagaacggccaggcctccccgccgcaccgacgacaagcccggcggcagg
ggcggcaagcccggcgatcgcggggggaaaccaggacgcggagaagttcgcggcagaggc
gtcaagtccggccccggcaaggagaaggccgagcagaaggaagccaaaccggctccggtg
gaaagcgcgcccgcaggtgagtccgccacaggtgatgccgcggccaagcgcaaacgccgt
cgccgcaagcccaaggccacgaccggcgagcagcagcccgagcagccgtga
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