Geomonas diazotrophica: KP003_11355
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Entry
KP003_11355 CDS
T07937
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
gnt
Geomonas diazotrophica
Brite
KEGG Orthology (KO) [BR:
gnt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gnt03019
]
KP003_11355
Messenger RNA biogenesis [BR:
gnt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KP003_11355
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Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
TraI_2
Cas3_HD
HDOD
Motif
Other DBs
NCBI-ProteinID:
QXE84996
LinkDB
All DBs
Position
complement(2608489..2609658)
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AA seq
389 aa
AA seq
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MKKTVAEIKDRDIVEAVFLVKEKIVAMAKNGKPYLTLKLMDKTGEVDAKIWDNADQVGSL
FDRNDFLAVKGKASVYLGKMQLIVSELKRVPEETVQLADFLPETDSDIKAMVAELHALVG
SLTDPDLARLLRSFFEDPELMAQYRTAPAAKGMHHVYLGGLLEHSLAVAKLVDAMVPLYQ
GLNRDLLIAGALLHDIGKVREMTYLRCFDYSDEGKLIGHITIGVEMLQERIALLPGFPVE
LAMLLKHMILSHHGQYEYGSPKRPKTLEATILNYLDDLDSKINGIRTHIRKEPDNPSRWT
SYHRLYDRYFFKEKPLAAQGIGESAEAPGSGVLPDCLEPSELIPETVPAPAPHMSEPERT
APEKPRQEQRGGDQGRKSFSNNPFAILKK
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaaaaccgttgccgaaataaaggaccgcgacatcgtcgaagcggtcttcctggtc
aaggaaaagatcgtcgccatggccaagaacggcaagccgtacctcaccctgaagctgatg
gacaagaccggggaggtggatgccaagatctgggacaacgccgaccaggtcggctccctg
ttcgatcgcaacgatttcctggccgtgaaggggaaggcgagcgtctatctcggcaagatg
cagctgatcgtctccgagctgaagcgggtccccgaggaaacggtccaactcgccgatttc
ctccccgagaccgacagcgacatcaaggccatggttgccgagctgcacgccctggtggga
agcctcaccgaccccgacctcgcgcggcttttacgctccttcttcgaggacccggaactc
atggcccagtaccgcaccgctcctgcggccaaggggatgcaccacgtctacctggggggg
ctcctggagcactcgctcgccgtggcgaagctggtagacgccatggtgccgctctaccag
gggctgaaccgcgatctcctcatcgccggagcgctcctgcacgatatcggcaaggtgcgg
gagatgacctacctgcgctgctttgactactccgacgagggtaagctcatcggccatatc
accatcggcgtggagatgctgcaggagcggatcgcgctgctccccggattcccggtcgag
ctcgccatgcttttaaagcacatgattctgtcgcaccacggccagtacgagtacggctcc
cccaagcgcccgaagacgcttgaggcaaccatcctgaactacctggacgacctggactcc
aagatcaacggcatcaggacccacatccgcaaggagccggacaacccgtcgcgctggacc
tcgtaccaccgcctctacgaccgctacttcttcaaggagaagccgctcgcggcgcagggg
ataggggagtcggccgaggctcccgggtccggggtgcttcccgactgcctggagccttcc
gagctgataccggaaacggtacccgctcccgccccgcacatgagcgagccggaaaggacc
gcgccggaaaagccgcgccaggaacagcggggcggcgaccaggggcgcaagtccttcagc
aacaaccccttcgccatcctgaagaagtga
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