Geomonas nitrogeniifigens: KP003_13040
Help
Entry
KP003_13040 CDS
T07937
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
gnt
Geomonas nitrogeniifigens
Pathway
gnt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gnt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KP003_13040 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gnt03019
]
KP003_13040 (pnp)
03016 Transfer RNA biogenesis [BR:
gnt03016
]
KP003_13040 (pnp)
Enzymes [BR:
gnt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
KP003_13040 (pnp)
Messenger RNA biogenesis [BR:
gnt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KP003_13040 (pnp)
Transfer RNA biogenesis [BR:
gnt03016
]
Prokaryotic type
tRNA degradation factors
KP003_13040 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
RdgC
Motif
Other DBs
NCBI-ProteinID:
QXE85317
LinkDB
All DBs
Position
complement(2999303..3001393)
Genome browser
AA seq
696 aa
AA seq
DB search
MVHTVQAECCGKTITIETGKIAKQASGAVMIKSGDTMVLVTAVAMKTAKEGQGFFPLTVN
YQEKAYAGGRIPGSFFKREGRPSDSETLTCRLIDRPIRPLFPEGFLNDTQIMATVMSADK
DHDPGILAMIGASAALMVSDAPFAGPIAGVKVGRVDGKFIANPSAEQEEQSDMEIVIAAS
KDAILMVEGSASEVSEDDLLEAIFFGKEAVQGILAAQEELAAKVGVVKRDVPAPVVNEAL
KARVDALAKEEMKAAVRIKAKGERHDAIDAITEKTVAALAEEFEGSEKEVKAFIEDLEYN
LVREHIIKDGSRIDGRDTKTIRNIATEVGFLPRAHGSALFTRGETQSIVAATLGTSVDEQ
RIDSLYGDSRKKFLLHYNFPPYSVGETSFRLAPGRREIGHGMLAERALQQVLPKHDDFPY
TIRIVSDITESNGSSSMATVCGGSMSMMDAGIPIKAPVAGIAMGLIKEGDEYAILSDILG
DEDHLGDMDFKVAGTAEGVTALQMDIKIGGVTREIMGAALAQAKAGRVHILGEMAKTLAT
PRGDLSSFAPRITTIWVKVDKIRDVIGSGGKNIRSVTEATGVAIDIEDTGKINIASNNKE
ACDLAIKMIRNLTAEAEEGKLYMGTVKKIMEFGAFVEIFPGTDGLVHVSELDTERVKNVS
DILKEGDKVLVKCIGIDKQGKIKLSRKEALGQTFTE
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggtacacactgtacaagcagagtgctgtggcaaaactatcactatcgaaacaggcaag
atcgccaagcaggcaagcggcgcggtcatgatcaaaagcggcgacaccatggtgctcgtc
accgccgtcgccatgaaaaccgccaaggaagggcagggcttcttcccgctcaccgtcaac
taccaggagaaagcgtacgcgggcggccgcatccccggctccttcttcaagcgcgaaggg
cgtccctccgacagcgaaaccctgacctgccgtctcatcgaccgtcccatccgtccgctg
ttcccggaagggttccttaacgacacccagatcatggccaccgtcatgtcggccgacaag
gaccacgatcccggcatcctcgccatgatcggcgcctccgcggcgctcatggtatccgac
gcgcccttcgcgggcccgatcgccggcgtcaaggtcggccgcgtggacggcaagttcatc
gccaacccgagcgccgagcaggaagagcagagcgacatggagatcgtgatcgcagcctcc
aaggacgcgatcctgatggtggaagggagcgcctccgaggtctccgaggacgacctcctc
gaagcgatcttcttcggcaaggaagcggtgcagggtatcctggcagcgcaggaagaactg
gctgccaaggtcggcgtcgtgaagcgcgacgtcccggcgccggtagtgaacgaggccctg
aaagcccgcgtcgacgcgctcgccaaggaagagatgaaggctgcggttcgcatcaaggcc
aaaggcgagcgtcacgacgccatcgacgccatcaccgagaagaccgtggcggcactggcc
gaggagttcgaaggctccgagaaagaggtcaaggccttcatcgaagacctcgagtacaac
ctggtgcgcgagcacatcatcaaggacggctccaggatcgacggccgcgacaccaagacc
atccgtaacatcgccaccgaggtcggcttcctgccgcgcgcccacggttccgccctgttc
acccgcggcgagacccagtccatcgtggccgccaccctgggcacctcggtcgacgagcag
cgcatcgactcgctctacggcgattccaggaagaagttcctcctgcactacaacttcccg
ccgtactccgtcggtgagaccagcttccgcctcgccccgggccgccgcgaaatcggccac
ggcatgctcgccgagcgcgcgctgcagcaggtgctcccgaaacacgacgacttcccctac
accatccgcatcgtctcggacatcaccgagagcaacggctcctcctccatggccaccgtt
tgcggcggctccatgtccatgatggacgcaggcatcccgatcaaggcaccggtcgctggt
atcgccatgggcctcatcaaggaaggcgacgagtacgccatcctctccgacatcctgggt
gacgaagaccacctgggcgacatggacttcaaagtggccggtaccgccgaaggcgtcacc
gcgctgcagatggacatcaagataggcggcgtgacccgcgagatcatgggtgccgcgctg
gcacaggcaaaggcaggccgcgtccacatcctgggtgaaatggccaaaaccctcgcgacc
ccgcgcggcgacctctcctccttcgcaccgcgcatcaccaccatctgggtcaaggtcgac
aagatccgcgacgtcatcggtagcggcggcaagaacatcaggagcgtcaccgaggcgacg
ggcgtggccatcgacatcgaggacaccggcaagatcaacatcgcctccaacaacaaggaa
gcatgcgacctcgccatcaagatgatccgcaacctcaccgccgaggccgaggaagggaag
ctctacatgggcaccgtcaagaagatcatggagttcggcgcgttcgtcgagatcttcccg
ggaaccgacggtctggtgcacgtctccgagctcgacaccgagcgcgtgaagaacgtgagc
gacatcctcaaggaaggggacaaggtgctggtgaagtgcatcggcatcgacaagcagggc
aagatcaagctctcccgcaaagaggctctgggccagaccttcaccgaataa
DBGET
integrated database retrieval system
