Geomonas diazotrophica: KP003_13460
Help
Entry
KP003_13460 CDS
T07937
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
gnt
Geomonas diazotrophica
Pathway
gnt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gnt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
KP003_13460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gnt03400
]
KP003_13460
Enzymes [BR:
gnt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
KP003_13460
DNA repair and recombination proteins [BR:
gnt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KP003_13460
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
HHH_5
AAA_11
Viral_helicase1
PIF1
nSTAND3
NAT10_TcmA_helicase
AAA_22
RsgA_GTPase
AAA_16
HHH
NTPase_1
MeaB
SLFN-g3_helicase
DUF4926
AAA_28
T2SSE
TrwB_AAD_bind
NACHT
DEAD
AAA_5
HHH_2
TraI_hel_assoc_N
cobW
AAA_29
PhoH
ATP_bind_1
MobB
UvrD-helicase
NPHP3_N
AAA
ABC_tran
MMR_HSR1
AAA_14
NB-ARC
CbiA
MoCF_biosynth
RuvB_N
ATPase_2
KAP_NTPase
Motif
Other DBs
NCBI-ProteinID:
QXE85393
LinkDB
All DBs
Position
complement(3088371..3090581)
Genome browser
AA seq
736 aa
AA seq
DB search
MKERSPAEHAVERISGSLERVTFHSEETGFCVLRVKVSGHRELVTVTGSAASITPGEFLE
CTGSWHNDRTHGMQFKAEHLKVVPPTTLEGIEKYLGSGMVHGIGHHFAKVLVQAFREEVF
DVIENRPERLLELPGIGRKRMEAVASAWVEQKAIREIMVFLQSNGLGTARAVRIYKSYGN
EAIFKVTENPYRLALDIHGIGFKTADALAANLGVARDSMIRAQAGVRHVLQELSASGHCA
AARSDLAQSAASLLDIPVAVIEAAIDAEIAEQNLVAEPIAGRPCLFLAPLHRAEVGVAGS
LSRLCNGAPPWGGIVAEEAIPWVESHNGITLSQSQRDAIRLALKSKVVVVTGGPGVGKTT
LVNSILAIIRSRELRVTLCAPTGRAAKRLTESTGIEAKTIHRLLEFDPQSFGFKRDRENP
LATDLLVMDEASMVDVVLMNKLLPAVPDHAGVIIVGDVDQLPSVGPGCVLADIIDSGAVA
TVRLTEIFRQAAGSKIIVNAHRINRGELPLQDEGKELADFYFIPAASAEDIHGKLLQVIT
ERIPKRFGFDPVRDIQVLTPMNRGGLGTGSLNAELQGVLNGKAEPRVTRFGTGFAPGDKV
IQTVNNYEKEVFNGDIGRIVEVHQEEGTLSVDFDERLVEYQFGELDEVSLAYATSIHKSQ
GSEYTAVVIPLSMQHYTMLERNLIYTAVTRGKKLVVVIGEAKALAMAVRTNKSQRRMTDL
ARRICSAGMVEATVQP
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaagatcacctgccgaacatgcggtcgaaagaatttccggctccctggagagg
gttaccttccacagcgaggagacgggcttctgcgtgctgcgtgtgaaggtttcaggacac
cgggaactggtgacggtgaccgggagcgccgcgtcgatcaccccgggcgagttcctcgag
tgcaccggttcctggcacaacgaccgcacccacggcatgcagttcaaggcggagcacctg
aaggtggtgccccccaccacgctggaggggatcgagaagtacctgggatccgggatggtg
cacggcatcggccaccacttcgccaaggtgctggtgcaggcctttcgcgaggaggtcttc
gatgtcatagagaaccgccccgagcggctgctggaactccccggcatcggccgcaaacgg
atggaggcggtggcgagcgcctgggtggagcagaaggcgatccgggagatcatggttttc
ctgcagtccaacggccttgggaccgcacgcgccgtgcgcatctacaagagctacggcaac
gaggcgatcttcaaggtcaccgagaacccgtaccggcttgccctcgacatccacgggatc
gggttcaagaccgccgacgccctggccgccaacctcggcgtcgcgcgcgactcgatgatc
cgggcgcaggccggcgtcaggcacgtgctgcaggaactctcggcaagcggccactgcgcg
gccgcccggtccgacctggcgcagagcgccgcctccctgctcgacatccccgttgccgtt
atcgaagccgccatcgacgcggagatcgccgagcagaacctggtcgccgagccgatcgcc
ggccgcccctgcctgttcctggcgccgttgcaccgtgccgaagtcggtgtcgccgggagc
ctctcgcgcctttgcaacggagccccaccctgggggggcatcgtcgcggaagaggccatc
ccctgggttgagagccacaacggcatcaccctgtcccaatcgcagcgcgacgccatccgg
cttgccttgaagagcaaggtggtcgtcgttaccggcggcccgggagtcggcaagaccacg
ctggtgaacagcatccttgccatcatccgctccagggaactacgggtgaccctgtgcgcc
ccgaccggacgggcggccaagcggctcaccgaatcgaccggtatcgaggccaagaccatc
caccgcctgctggagttcgacccgcagagcttcggcttcaagcgcgaccgggaaaacccg
cttgccaccgacctcctggtgatggacgaggcctccatggtcgacgtggtgctgatgaac
aagctcctccccgccgtcccggaccacgccggcgtgatcatcgtgggggacgtggaccag
ctcccctccgtcggccccggctgtgtccttgccgacatcatcgattcgggcgccgttgcc
accgtgcgcctgaccgagatcttccgccaggccgcgggctccaagatcatcgtcaacgcg
caccgcatcaaccgcggcgagctccccctgcaggacgaggggaaggagctggccgatttc
tacttcatccccgccgcgtccgccgaggacatccacggcaagctgctccaggtgatcacc
gagcgtatcccgaagcgtttcggcttcgacccggtgcgcgacatccaggtgctcaccccc
atgaaccgcggcggactcggcaccggatccttgaacgcggaactgcagggtgtgctaaac
ggcaaggctgaacccagggtgacccgcttcggcaccggcttcgcgcccggcgacaaggtg
atccagaccgtgaacaactacgagaaggaagtcttcaacggcgacatcggccggatcgtg
gaggtgcaccaggaggaggggacgctcagcgtggatttcgacgagcggctggtggaatat
cagttcggcgaactggacgaggtgagcctcgcctacgccaccagcatccacaagagccag
gggtccgaatacaccgccgtcgtgatccccctgtccatgcagcactacaccatgctggag
cgcaacctgatctacaccgcggtgacccggggcaagaagctggtggtggtgatcggcgaa
gccaaggcgctggccatggccgtgcgcaccaataaatcgcagcgcaggatgacggacctg
gcgcgcaggatctgcagcgccggcatggtggaagcgaccgtgcagccttga
DBGET
integrated database retrieval system
