Geomonas diazotrophica: KP003_15340
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Entry
KP003_15340 CDS
T07937
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
gnt
Geomonas diazotrophica
Pathway
gnt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gnt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KP003_15340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gnt03021
]
KP003_15340
03400 DNA repair and recombination proteins [BR:
gnt03400
]
KP003_15340
Enzymes [BR:
gnt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KP003_15340
Transcription machinery [BR:
gnt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KP003_15340
DNA repair and recombination proteins [BR:
gnt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KP003_15340
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
Mis14
DUF7235
Motif
Other DBs
NCBI-ProteinID:
QXE85731
LinkDB
All DBs
Position
complement(3533197..3534216)
Genome browser
AA seq
339 aa
AA seq
DB search
MYRNWRDLIRPKKLQVETESLTNTYGKFYAEPFERGFGTTLGTGLRRVLISSLQGAAIVS
VKAKGVLHEFSAVPGVTEDMTDIILNLKGVRLKVHGNESRMIRIVQKGEGVVKAKDIITD
NNVEILNPEHHIATCSKDANLEMDLMVKVGKGYVPADRNRDEKAPVGTIPIDAIFSPVHK
VNFTVTNARVGQITDYDKLTIEVWTDGSVKPQDAVAYASKILKDQLSIFINFDEDVEPQE
EAEPEEERERFNENLYRSVDELELSVRSANCLKNAGIKLIGELVSRTEAEMLKTQNFGRK
SLNEIKDILVDMGLTLGMKLENFPDPEIMRRLRGEQKEE
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgtatagaaattggcgcgatctgatcaggccgaagaagcttcaggttgagacagaatcg
ctgactaatacatacggcaagttctacgccgagcctttcgaaagggggttcggtaccacc
ctgggaacggggctgcgtagggtcctcatctccagcctgcagggggcggccatcgtctcc
gtcaaggccaagggcgtgctgcacgaattctccgcggtcccgggcgttaccgaggatatg
acggatatcatcctcaacctgaaaggggtgcgcctcaaggtgcacggcaacgagtcccgg
atgatccggatcgtgcagaagggtgaaggggtggtcaaggcgaaggatatcatcaccgac
aacaacgtcgagatcctgaacccggaacatcacatcgcaacctgctccaaggacgccaat
ctggagatggacctcatggtgaaagtcggcaagggttacgtcccggctgaccgcaaccgt
gacgagaaggcaccggtcgggaccatcccgatcgacgcgatcttctccccggttcacaag
gtgaacttcaccgtcaccaacgctcgcgtaggccagatcaccgactacgacaagcttact
atcgaagtctggaccgatggcagcgtgaaaccgcaggacgcggttgcctacgcttccaag
atcctcaaggaccagctttccatcttcatcaacttcgacgaagacgtggagccccaggag
gaggcggagccggaagaagagcgcgagcgcttcaacgagaacctctaccgctcggtcgac
gagctcgagctctcggttcgctccgccaactgcctcaaaaacgccggcatcaagctgatc
ggcgaactggtctccaggaccgaggcagagatgctgaagacccagaacttcggcaggaaa
tcgctgaacgaaatcaaggacatcctggtcgacatgggcctcaccctcggcatgaaactg
gagaacttcccggatcccgagatcatgaggcgcctgcgcggcgagcagaaagaagaatag
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