Geomonas diazotrophica: KP003_16065
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Entry
KP003_16065 CDS
T07937
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
gnt
Geomonas diazotrophica
Pathway
gnt03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gnt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KP003_16065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gnt03400
]
KP003_16065
Enzymes [BR:
gnt01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
KP003_16065
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
KP003_16065
DNA repair and recombination proteins [BR:
gnt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
KP003_16065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
Ribosomal_S13
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
QXE85863
LinkDB
All DBs
Position
complement(3674493..3675278)
Genome browser
AA seq
261 aa
AA seq
DB search
MPELPDLTIYADNLNKALAGKKVRRVEYHQRGQLNVSDAELSSAVAGATLAGVERAGKQV
AFRFGNGTVLRVHLMLTGGFVLTDSGQLDRLRYLVLTVTFDDGSVLAVSDEKGWASVALN
PGDERDAPDALDLTVDQLQQLCRKKPRTLIKPLLLDQALIGGIGNAYADEILWAARISPK
SPAGKLPPEAVRALAAAIPQVLEDAIAELRKRHPDMVSGEYREFLKVHRPELKTSPTGAR
IIKENVQSKRTYYTEEQLLYQ
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atgccagaactgcccgatctcacaatctacgctgacaatctgaacaaggccttggccggc
aagaaagttcgcagggtggaataccaccagagggggcaactcaacgtttccgatgccgaa
ctatcctcggccgttgcgggagcaacgctcgccggcgtggaaagagccgggaagcaggtc
gccttccggttcggcaacgggaccgttttgcgggtgcacctgatgctgaccggcggcttc
gtcctgaccgactccggccaactcgaccgcctgcgctacctagtgcttaccgtaaccttc
gacgacggctccgtccttgccgtcagcgacgaaaagggatgggccagcgtcgccctcaac
cccggcgatgagagggacgcacccgacgcccttgacttgacggtcgaccagttgcagcag
ctctgccggaagaagccgaggaccctgatcaagccgctgctgctcgaccaggcactcatc
ggcggtatcggcaacgcctacgccgacgagatactgtgggccgcgcgcatctcccctaag
tccccagccggcaagctccctccagaagcggtccgggccctggcggccgccatcccgcag
gtgctcgaagatgccatcgccgaactgaggaagcgccacccggacatggtctcgggtgag
taccgggagttcctgaaggtgcaccgccccgagctgaaaacctcgcctaccggtgccagg
atcatcaaggaaaacgtgcagtccaagcgaacctactacaccgaggaacagctgctgtac
cagtaa
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