Geomonas diazotrophica: KP003_17695
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Entry
KP003_17695 CDS
T07937
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gnt
Geomonas diazotrophica
Pathway
gnt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gnt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KP003_17695 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gnt03019
]
KP003_17695 (recQ)
03400 DNA repair and recombination proteins [BR:
gnt03400
]
KP003_17695 (recQ)
Enzymes [BR:
gnt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KP003_17695 (recQ)
Messenger RNA biogenesis [BR:
gnt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KP003_17695 (recQ)
DNA repair and recombination proteins [BR:
gnt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KP003_17695 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
QXE86174
LinkDB
All DBs
Position
complement(4001606..4003396)
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AA seq
596 aa
AA seq
DB search
MPLSHIQILNEVFGFKSFRPRQQEIVETVLSGKDAFVLMPTGGGKSLCYQVPALCLPGTA
LIVSPLISLMKDQVDALRENGVAAACYNSALGEAEARRVLAELHAGELKLLYVAPERLLS
DGFIDRIRTLPISLFAVDEAHCVSQWGHDFRPEYAQLGMLREIFPQIPMIALTATADAQT
RGDILSRLGLQDATCFCTGFDRPNIRYSVMEKNKPFSQLTAFLSTRKDEAGIVYALSRKR
VEEVARKLCESGIKAAAYHAGLPDRERHEAQEAFLRDDVKIVVATVAFGMGIDKSNVRFV
VHYDMPKSIESYYQETGRAGRDGLPADALLLFGYGDIAVARGLIGNGGNEEQNRIELHKL
NCMVGFAEAQTCRRQVLLGYFGDSLAAGCGNCDICESPPERFDATEDARKALSCVYRVGQ
RFGMGHVIDVLRGSQNQRVHELKHDQLSTFGIGKHHSQDVWGNLLRQLIHLGYLEQDVAG
FSVLKLTEKARPLLRGETKLELAKPRDTRVVEKKSAARKPSYDGELFGELRELRKQIADE
QQVPPYVVFPDATLAEMAAQMPKDKWELLKITGVGQHKMARYGDAFLRVIKGHQST
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgccgctttcccatatccagatcctgaacgaggtgttcggcttcaagtcttttcggccg
cgccagcaggagatcgtggagacggtgctctccgggaaggacgctttcgtcctgatgccg
acgggcggcggcaaatccctgtgctatcaggtccccgccctttgccttccgggcaccgcc
ctcatcgtttcgccgctgatctcgttgatgaaggaccaggtcgacgccctgcgcgagaac
ggggtcgccgctgcctgctacaactcggccctgggcgaggccgaggcgcgccgggtgctg
gcggaactgcacgcgggcgagctgaaactcctctacgtcgcgccggagcggctgctctcc
gacggcttcatcgaccgcatcaggaccctccccatctccctctttgccgtggacgaggcc
cactgcgtctcccagtgggggcacgacttccgccccgagtacgcgcagctcggcatgctg
cgcgagatattcccgcagatcccgatgatcgccctcaccgcgaccgccgatgcccagacg
cgcggagacatcctctcccggcttgggctccaggatgccacctgcttctgcaccggtttc
gaccgccccaacatccgttacagcgtaatggagaagaacaagcccttcagccagctgacc
gccttcctgtccaccaggaaggacgaggctggcatcgtctacgccctgtcgcgcaagcgg
gtggaggaggtggccaggaagctctgcgagagcgggatcaaggccgccgcctatcacgcg
gggctgcccgaccgggagcgccacgaggcccaggaagccttcctgcgggacgacgtgaag
atcgtcgttgcgacggtcgccttcgggatggggatcgacaagtccaacgtccgcttcgtg
gtgcactacgacatgcccaagagcatcgagagctactaccaggaaaccgggcgcgccggc
cgcgacgggctcccagccgatgcgctgctcctcttcggttacggcgacatagcggtggcc
cgcgggctgatcggcaacggcggcaatgaggagcagaaccggatcgagctgcacaagctc
aactgcatggtgggctttgccgaagcgcagacctgccgccggcaggtgcttttgggttac
ttcggggacagcctggcggcggggtgcggcaactgcgacatctgcgagagtccgccggag
cggttcgacgcaaccgaggatgccaggaaggcgctctcctgcgtctaccgggtcgggcag
cgtttcggcatggggcacgtcatcgacgtgctgcgcggatcgcagaaccagcgagtccac
gagttgaagcacgaccagctttccaccttcggcatcgggaagcaccactcacaggatgtc
tggggaaacctcttgcgccagttgatacaccttgggtacctggaacaggatgtggccggt
ttttcggtattgaagctgacggaaaaggcgcgcccgctgttgaggggggagacgaagctg
gagttggcgaagccgagggatacccgggtggtcgagaagaagagcgcggccaggaagccc
tcctacgacggcgagctcttcggggagctgcgggagctgcgcaagcagatcgcggacgag
cagcaggtgccgccgtacgtggtgttccccgacgcgacgctggccgagatggcggcgcag
atgcccaaggacaagtgggagctcctaaagattaccggcgtggggcagcacaagatggcg
cgctatggcgatgcgttcctgcgcgtgataaaggggcaccagtctacttga
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