Geomonas diazotrophica: KP003_19490
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Entry
KP003_19490 CDS
T07937
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
gnt
Geomonas diazotrophica
Pathway
gnt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gnt00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
KP003_19490
09124 Replication and repair
03420 Nucleotide excision repair
KP003_19490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gnt03021
]
KP003_19490
03036 Chromosome and associated proteins [BR:
gnt03036
]
KP003_19490
03400 DNA repair and recombination proteins [BR:
gnt03400
]
KP003_19490
Enzymes [BR:
gnt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
KP003_19490
Transcription machinery [BR:
gnt03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
KP003_19490
Chromosome and associated proteins [BR:
gnt03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
KP003_19490
DNA repair and recombination proteins [BR:
gnt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
KP003_19490
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
QXE86512
LinkDB
All DBs
Position
complement(4403213..4405624)
Genome browser
AA seq
803 aa
AA seq
DB search
MKPASDIINIPVGYFALPVPRTGSIEPRSGYDRSTSDGQEIHQRVQRKRAQDDPTYQAEV
PVGRLLERGGFRFQVNGRMDGVYGRENTCIEEIKSCFNLWDLKRRLTGGSLQEPYCLQLC
TYGYFHWLEHGVVPRLTFHLVSSRNGQSADLEITLDLEEYQGWLDARLDELVREAARAAK
RAQRRRKAAATFPFPFEKPRPGQVELMQEIELGMALGRRMLIQAPTGLGKTVGVLHPVLR
EALGRGQAVCYVTPKNSQHEVAEDAVHRFREAGSKLRSLTITAKSKICFQNEPICTPDYC
EYARDYYAKVARHGLVELLEKKRSLKSRNFRQMGEEYQVCPFELQIDSARLADVVICDYN
YVFAPRSALGRAAGLPVDQVGKPNLVIDEAHNLPPRAMEYYSPRLSSAVLEGMREDLAGV
PPSFRREAAELLEECVAAVLSCRRGDGGKASRIEPPLAPFLELDGRLRALLSRYLEADVE
IRQEDPVLRLCYYWSQFTETLEFAVRSERQEFFTSYQPHGGGGSVKVTCCDASELIRERY
AEYQQVVGFSATLKPMEYYAKLSGLDPEEVRWSEFQSPFPPERRKLLIIPQVSTRYSQRE
RNYARIADALARIVALRRGNYLAFFPSFGFLERVAELFRAPEGFEVLRQERSMKGARTAE
FLEQLRSGVVPTVVFAVQGGSLSEGVDYAGDMVIGAFVVGPPLPNYDLEREEMRAYYQRH
YGKGFEYAYTIPAMSKAIQSAGRVIRSETDRGVIVLMDDRFLELGYSSAMPADWFETRAE
ELVSGAILKDVGDFWARPLDPEQ
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccagcaagcgacatcatcaacatcccggttggctacttcgctctccccgtgccg
cgcaccgggagcatcgagccccgttcgggctacgaccgttccacgagcgacgggcaggag
atccaccagcgggtgcagaggaaacgggcgcaggacgacccgacctaccaggccgaggtg
ccggtggggcggttgctcgagcgcggcgggttccgcttccaggtcaacgggcgcatggac
ggcgtctacggccgcgaaaatacctgcatcgaggagatcaagagctgcttcaacctctgg
gacctgaagcggcgcctgaccggcgggtcgctccaggaaccgtactgcctgcagctttgc
acctacgggtacttccattggctggagcacggcgtggtgcccaggctcaccttccacctg
gtctcgtcgcgcaacggccagtcggcggacctggaaatcacgctcgacctggaagaatat
caggggtggctcgacgcccggctggacgaactggtccgggaggcggccagggccgccaag
agagcgcaacgcaggcgcaaagcggccgcgaccttcccctttcccttcgaaaagccgcgt
ccggggcaggtggagctcatgcaggagatcgaactggggatggcgctggggcggcgcatg
ttgatccaggcgccgaccgggctggggaaaacggtgggggtcctgcacccggtgctcagg
gaggcgctcgggcgggggcaggcggtctgctacgtgacgccgaagaacagccagcacgag
gtcgccgaggacgcggtgcacaggttccgcgaggcggggtcgaagctgcggtccttgacc
atcacggcgaagagcaagatctgtttccagaacgagccgatctgcaccccggactactgc
gagtacgcacgcgactactacgcgaaggtggcgcgccacggcctggtggagctgctggag
aagaaaaggagcctcaaaagccgcaacttccggcagatgggcgaggagtaccaggtctgc
cccttcgagctgcagatcgacagcgccaggctggccgacgtggtcatctgcgactacaac
tacgtcttcgcgccgcgctcggcgctggggcgcgccgccggtctcccggtggaccaggtg
ggcaagccgaacctcgtgatcgacgaggcgcacaacctccccccccgggccatggaatac
tactccccgaggttgtccagcgcggtccttgaggggatgcgcgaggatctggccggggtg
ccgccttcgtttcggcgcgaggccgccgagctcctggaggagtgcgtcgcggcggttctc
tcctgccgtcggggggacggggggaaagcctcccggatcgagccgccgctcgcccccttc
ctggagctggacggcaggctgcgcgcccttttgtcccgctacctcgaggcggatgttgag
atcaggcaggaggatcccgtcctgcgcctttgctactactggtcgcagttcaccgagacg
ctggaattcgccgtgcgctcggagcgccaggaattcttcacctcgtaccagccgcacggc
ggcggtggcagcgtcaaggtgacctgctgcgacgcctcggagttgatccgggagcgctat
gccgagtaccagcaggtggtcggcttttcggcgacgcttaagccgatggagtactacgcc
aagctctccggtctcgacccggaagaggtgcgctggtccgagttccagagccccttcccc
ccggagcggcgcaagcttttgatcatcccgcaggtctccacccgctattcccagcgcgag
cgcaactacgcgcgcatcgccgatgccctggcgcggatcgtcgccctcaggcgcggcaat
tacctggccttcttccccagtttcggcttcctggagcgggtggccgagctgttccgggcg
ccggaaggcttcgaggtgctccggcaggaacggagcatgaagggggcgcggaccgcagag
ttcctggagcagctccggtcgggggtggtgcccacggtggtcttcgcggtgcagggggga
tcgctttcggaaggggtggattacgcgggtgacatggtgatcggcgccttcgtggtcggg
ccgccgctgcccaactacgacctggagcgcgaggagatgcgcgcctactaccagcgccat
tacggcaaggggttcgagtacgcctacaccatcccggccatgtccaaggcgatccagtcc
gctgggcgggtgatccgctcggagaccgaccgcggcgtcatcgtgctcatggacgaccgt
ttcctggaactgggttacagtagcgccatgccggcggactggttcgagacgcgggccgag
gagctggtgtcgggcgcgatactgaaggacgtcggtgacttctgggcacggccgctggac
ccggaacaataa
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