Geomonas nitrogeniifigens: KP003_20825
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Entry
KP003_20825 CDS
T07937
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
gnt
Geomonas nitrogeniifigens
Pathway
gnt03420
Nucleotide excision repair
gnt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gnt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KP003_20825
03430 Mismatch repair
KP003_20825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gnt03400
]
KP003_20825
Enzymes [BR:
gnt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KP003_20825
DNA repair and recombination proteins [BR:
gnt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KP003_20825
MMR (mismatch excision repair)
Other MMR factors
KP003_20825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
AAA_11
ResIII
DEAD
Motif
Other DBs
NCBI-ProteinID:
QXE86759
LinkDB
All DBs
Position
4709488..4711695
Genome browser
AA seq
735 aa
AA seq
DB search
MKLLHNLNPPQQEAVLHGEGPMLVLAGAGSGKTRVIVHRIAYLIHERGVPPWQILAVTFT
NKAAGEMRERIKHMLGEGDAPLVSTFHSTCARILRSDIKSLGYDSNFAIYDDKDCERLLK
DCAAELNLDEKRYPVKLLGSAIDEFKNQGMSPFDVPADSPYQATLARVYRCYQERLKRCN
AADFGDLLLLTVQLFEEHPEVLDKYLQRWRWIMVDEYQDTNPVQYRLVQLLAGARQNLCV
VGDDDQSIYGWRGADIRNILEFEKDFPGVKVVKLEQNYRSTKTILDGAWHVVQKNRGRKP
KRLWTDNPEGERIVYRTLPNEWEEGRTVCREVERFLAEGGDLSEVAVFYRTNAQSRVIEE
ALVGAQIPHHMVGGVRFYARLEVKDILAYLKVLDNPSDDVAVKRIINTPPRGIGNTTVQK
ISDFANEKGLPFYDAMLEGAYGPLLPAAARGKVAAFVNELEGYKSLSEKLPLSELTAAVI
NDSGYYARLKTQRTDEAQERIDNLQELVTAMQTYESGPGEHGLADFLERVALVSDLEHEG
EGKKSSATLMTLHSAKGLEFQLVFMIGMEEKLFPHVRALENPEQMEEERRLCYVGMTRAK
KRLFLLNVRRRHIFGQEQMNAPARFIADIPRELLDSGDLWQRPEPSRDFSASSHNLAALF
EDEIEPEFEDNEVRMVPDDEDDSIWVGMKVRHAQFGPGTIRKIEGEGDNQKVIVWFNSLG
GPKKLLVRFAGLERA
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgctccacaatctgaaccctccccagcaggaggcggtgctgcacggcgaggga
ccgatgctggtccttgccggcgccggctccggcaagacgcgcgtcatcgtgcaccgcatc
gcctacctcatccacgagcggggagtcccaccctggcagatcctggccgtaaccttcacc
aacaaggccgccggcgagatgcgcgagcgcatcaagcacatgctgggggagggggacgct
cctctcgtctccaccttccattccacctgcgcccgcatcctgagaagcgacatcaagagc
ctcggttacgactcgaacttcgccatctacgacgacaaggactgcgagcgccttttgaag
gactgcgccgccgagctgaaccttgacgagaagcgctacccggtgaagctcttggggagc
gcgatcgacgagttcaagaatcaggggatgagccccttcgacgtcccggcggattccccc
taccaggcgaccctggcccgggtctaccgctgctaccaggaacgcctgaagcgctgcaac
gcggccgacttcggggacctgctccttttgaccgtgcagctcttcgaggagcacccggag
gtgctggacaagtacctgcagcgctggcgctggatcatggtggacgagtaccaggacacc
aaccccgtgcagtaccgcctggtccagcttctggccggcgcccgccagaacctttgcgtg
gtgggtgacgacgatcagtccatctacggctggcgcggggcggatatccgcaacatcctg
gaattcgagaaggatttccccggggtcaaggtggtgaagctggagcagaactaccgctcc
accaagaccatcctggacggcgcctggcacgtggtgcagaagaacagggggagaaagccc
aagcgcctctggaccgacaaccccgagggcgagcgcatcgtgtaccggaccctccccaac
gagtgggaggaggggcgcaccgtctgccgggaggtcgaacgtttcctcgccgaagggggc
gatctctccgaggttgctgtcttttaccggaccaacgcccagtcccgcgtcatcgaggag
gccctggtcggggcccagatcccgcaccacatggtcggaggcgtgcgcttctatgcgagg
ctcgaggtgaaggacatcctcgcctacctgaaggtgctggacaacccttccgacgacgtg
gcggtgaagaggatcatcaatacgccgccgcgcggcatcggcaacaccacggtccagaag
atctccgatttcgccaacgaaaaggggctccctttctacgacgccatgctggaaggggcc
tacgggccgctgctccccgccgccgcccggggcaaggtcgccgccttcgtcaacgagttg
gaggggtacaagagcctgagcgagaagctcccgttgtccgagctcaccgccgccgtcatc
aacgattccggctactacgcccgcctgaagacccagcggaccgacgaggcccaggagcgg
atcgacaacctgcaggagttggtgaccgccatgcagacctacgagagtgggccgggcgag
cacgggctggccgatttcctggagcgggtcgcgctggtctccgacctggagcacgagggg
gaggggaagaaatcctccgccacgctgatgaccctgcactcggccaaggggctggaattc
cagctggtcttcatgatcggcatggaggagaagctcttcccccacgtgcgcgccctggag
aacccggagcagatggaggaggaaagaaggctctgctacgtggggatgacccgcgccaag
aagcgcctgttccttctgaacgtgcgccgccgccacatcttcgggcaggagcagatgaac
gcccccgcccgcttcatcgccgacatccccagggaactcctggacagcggcgacctttgg
cagcgccccgagccctcccgcgacttttctgcctcctcccacaacctcgccgccctgttc
gaggacgagatcgagccggagttcgaggacaacgaggtgcgcatggtccccgacgatgag
gacgacagcatctgggtcggcatgaaggtgcgccacgcccagttcgggccggggaccatc
aggaagatagaaggggagggggacaaccagaaggtgatcgtctggttcaattccctgggg
gggccgaagaagctcctggtgcgcttcgccgggcttgagcgggcctga
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