Geodermatophilus obscurus: Gobs_2121
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Entry
Gobs_2121 CDS
T01163
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gob
Geodermatophilus obscurus
Pathway
gob03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Gobs_2121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gob03400
]
Gobs_2121
Enzymes [BR:
gob01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Gobs_2121
DNA repair and recombination proteins [BR:
gob03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Gobs_2121
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
ADB74806
UniProt:
D2SFQ1
LinkDB
All DBs
Position
2206095..2207015
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AA seq
306 aa
AA seq
DB search
MSRQLVRVDGRQLHVSNLEKVLFPEVSFTKAQVIDYYVRIAPVLLPHLSGRPVTFSRWPD
GVEGQAFFEKNSARHAPDWVRKVTVPSPGSSRGRETLDMVILETVADLAWAANLAALELH
VPQWQVGSRLQPALPDLLVLDLDPGPDAGILECCEVADRLREWLVDDGLDPVVKTSGSKG
MQVYAPIRVTDREHPSRYAKALAQQLSAETPDRVVWRMEKVLRPGKVLIDWSQNNPAKTT
VAPYSLRARPDATVSTPIGWDEVEAVLDGADPGALRFRTEDVLARVEDYGDLFDIAGAQR
AVLPSA
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
gtgagccggcagctggtgcgcgtggacgggcggcagctgcacgtgtccaacctggagaag
gtcctcttccccgaggtgtccttcaccaaggcccaggtcatcgactactacgtgcggatc
gcgccggtgctgctgccgcacctgtccggccggccggtgaccttctcccggtggcccgac
ggggtcgagggtcaggcgttcttcgagaagaacagcgcccggcacgcccccgactgggtg
cggaaggtgaccgtgcccagccccggcagctcgcgggggcgcgagaccctcgacatggtc
atcctcgagaccgtcgccgacctcgcgtgggcggccaacctggccgccctggagctgcac
gtgccgcagtggcaggtcggcagccggctgcagccggcgctgccggacctgctcgtgctc
gacctcgaccccggtccggacgccggcatcctcgagtgctgcgaggtcgccgaccggctg
cgcgagtggctggtcgacgacggcctggaccccgtggtcaagacgtcggggtccaagggc
atgcaggtgtacgcgccgatccgggtgaccgaccgcgagcaccccagccggtacgccaag
gcgctggcgcagcagctgtcggccgagacgcccgaccgcgtggtgtggcggatggagaag
gtgctgcggccgggcaaggtgctcatcgactggagccagaacaacccggccaagacgacg
gtcgccccgtactcgctgcgcgcccggcccgacgcgacggtgtccaccccgatcggctgg
gacgaggtcgaggccgtgctcgacggcgccgaccccggcgcgctgcgcttccgcaccgag
gacgtgctggcccgggtcgaggactacggcgacctgttcgacatcgccggggcgcagcgc
gccgtcctgccctcggcgtga
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