Geodermatophilus obscurus: Gobs_3677
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Entry
Gobs_3677 CDS
T01163
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gob
Geodermatophilus obscurus
Brite
KEGG Orthology (KO) [BR:
gob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gob03016
]
Gobs_3677
Enzymes [BR:
gob01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Gobs_3677
Transfer RNA biogenesis [BR:
gob03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Gobs_3677
Prokaryotic type
tRNA splicing ligases
Gobs_3677
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADB76261
UniProt:
D2SCD3
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All DBs
Position
3858875..3860032
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AA seq
385 aa
AA seq
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MEKINDRLLNWASILEPTTRTQAERTASMPFIHPHVALMPDAHLGLGATVGSVIPTDRAV
IPAAVGVDIGCGMMAVRTQFTGDDVRGRNLATLHEQVSRAIPLSAGRYNKKLRETAAARV
EELRDLPGAAQADGVAHNWPLQLGSLGSGNHFIEVCLDEADRVWLFLHSGSRGVGNRLAS
KHIRVAQERCADRDLPDRDLAYLKEGTPEFDAYIEALHWAQRFAALNREEMMDRLAEQVS
RFLTEEVHRAQVVQCHHNYTERETHHGTEVWLSRKGAISARTGQWGLIPGSMGAASYVVV
GKGNVESLTSAPHGAGRNHSRGAARRMFTRADLDRRMRGIAWGRSDAFLDEHPDAYKPID
QVMADAADLVEVRHTLRQVVNVKGD
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atggagaagatcaacgaccggctgctcaactgggcgtcgatcctcgagccaaccacccgc
acgcaggccgagcgcaccgcctcgatgccgttcatccacccgcacgtggcgctgatgccc
gacgcgcacctcgggctgggggccaccgtcggctcggtgatcccgaccgaccgggccgtc
atcccggcggcggtgggggtggacatcggctgcgggatgatggcggtgcgcacgcagttc
accggcgacgacgtccgcggccggaacctggcgacgctgcacgagcaggtctcccgggcc
atcccgctgtcggccggccgctacaacaagaagctgcgcgagaccgcggcggcgcgggtc
gaggagctgcgcgacctgccgggtgccgcgcaggccgacggcgtcgcgcacaactggccg
ctgcagctgggctcgctggggtcgggcaaccacttcatcgaggtctgcctcgacgaggcc
gaccgggtgtggctgttcctgcactcgggctcgcgcggcgtgggcaaccggctggcgtcc
aagcacatccgggtggcgcaggagcggtgcgccgacagggacctgcccgaccgcgacctc
gcctacctgaaggagggaacgccggagttcgacgcctacatcgaggcgctgcactgggcg
cagcggttcgccgcgctgaaccgcgaggagatgatggaccgcctcgccgagcaggtctcc
cgcttcctcaccgaggaggtgcaccgggcgcaggtcgtgcagtgccaccacaactacacc
gagcgggagacccaccacggcaccgaggtgtggctgtcccgcaagggcgcgatctccgcg
cggaccgggcagtgggggctgatccccggctcgatgggcgcggcgtcctacgtcgtcgtc
ggcaaggggaacgtcgagtcgctgacctcggcgccgcacggcgccgggcgcaaccactcg
cggggtgccgcgcggcggatgttcacccgcgccgacctcgaccggcgcatgcggggcatc
gcctggggccgctcggacgccttcctcgacgagcaccccgacgcgtacaagcccatcgac
caggtcatggccgacgcggccgacctggtggaggtgcggcacacgctgcgccaggtggtc
aacgtcaagggcgactga
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