Geodermatophilus obscurus: Gobs_3954
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Entry
Gobs_3954 CDS
T01163
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
gob
Geodermatophilus obscurus
Pathway
gob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Gobs_3954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gob03019
]
Gobs_3954
03016 Transfer RNA biogenesis [BR:
gob03016
]
Gobs_3954
Enzymes [BR:
gob01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Gobs_3954
Messenger RNA biogenesis [BR:
gob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Gobs_3954
Transfer RNA biogenesis [BR:
gob03016
]
Prokaryotic type
tRNA degradation factors
Gobs_3954
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_KhpA-B
KH_2
KH_NusA_1st
S1_RRP5
OB_cyt-4
Motif
Other DBs
NCBI-ProteinID:
ADB76521
UniProt:
D2SDV5
LinkDB
All DBs
Position
complement(4150911..4153199)
Genome browser
AA seq
762 aa
AA seq
DB search
MSAPTTQHSTAAAEFDPEDGVTTATAVIDNGSFGSRTITFETGRLAKQAAGSVVVTMGDT
MLLSATTAGRQPKEHFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSEDAILTCRLIDRP
LRPTFAKGLRNEVQVVITVLSLDPDHLYDVLAINGASASTQLSGLPFSGPVGGTRVALVN
GQWVGFPTHAELEDAVFDMVVAGRVLPDGDVAIMMVEAEATEKTIELVAGGATAPTEEVV
AQGLEAAKPFIKALCEAQSALAEKAAKPVADFPRFLDYQDDVYAAVESHAGARLAEVQAI
AGKQERNDATDELKDGTVAALAGRFEGREKEVSAAFRALTKKVVRQRILRDKVRIDGRGL
TDIRPLSAEVEVLPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVNRKRYMHNYN
FPPYSTGETGRVGSPKRREIGHGALAERALLPVLPDREEFPYAIRQVSEALGSNGSTSMG
SVCASTLALLNAGVPLRAPVAGIAMGLVSDEVDGKTEYVALTDILGAEDAFGDMDFKVAG
TRDFVTALQLDTKLDGIPSDVLAQALTQARAARLHILDVMNEAIDAPDEMSPYAPRVTTV
RIPVDKIGAVIGPKGQMINAIQDETGADITIEDDGTIYVGASDGPSAQAAVDRINAIANP
QMPKVGERFLGTVVKTTPFGAFVSLLPGKDGLVHISKLGGGKRIGKVEDVVNVGDKLQVE
ITDIDARGKISLVPVAAEGDGAADAAPAGDAAPAADAAPAEA
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgcacccaccacccagcacagcaccgctgctgcggagttcgaccccgaggacggg
gtcaccaccgccaccgcggtcatcgacaacggcagcttcggcagccgcaccatcaccttc
gagaccggccggctcgccaagcaggccgccggctccgtcgtcgtcaccatgggcgacacc
atgctgctgtcggccaccacggccggccgccagcccaaggagcacttcgacttcttcccg
ctgaccgtggacgtcgaggagcgcatgtacgccgccgggcgcatccccggctcgttcttc
cgccgcgagggccgtccctccgaggacgcgatcctcacctgccggctgatcgaccgcccg
ctgcgcccgaccttcgccaagggcctgcgcaacgaggtccaggtggtcatcaccgtcctg
tcgctggaccccgaccacctctacgacgtgctggccatcaacggcgcctcggcgtcgacc
cagctctccggcctgccgttctccggcccggtcggcggcacccgcgtcgcgctggtcaac
ggccagtgggtgggcttcccgacccacgcagagctcgaggacgccgtcttcgacatggtc
gtggcaggccgcgtcctcccggacggcgacgtcgcgatcatgatggtcgaggccgaggcc
accgagaagacgatcgagctggtcgccggtggcgccaccgcgccgaccgaggaggtcgtc
gcgcagggcctcgaggccgcgaagcccttcatcaaggcgctgtgcgaggcgcagtcggcg
ctggccgagaaggccgccaagccggtcgcggacttcccgcgcttcctggactaccaggac
gacgtctacgccgcggtggagtcgcacgccggcgcccggctggccgaggtccaggccatc
gccggcaagcaggagcgcaacgacgccacggacgagctcaaggacgggaccgtcgcggcg
ctcgcgggccggttcgagggccgcgagaaggaggtctccgccgccttccgcgcgctgacc
aagaaggtcgtccggcagcgcatcctgcgggacaaggtgcgcatcgacggccgtggtctc
accgacatccgcccgctctcggccgaggtcgaggtcctcccgcgggtgcacggctcggcg
ctgttcgagcgcggcgagacccagatcctgggcgtcaccacgctgaacatgctccgcatg
gagcagcagctggacacgctgtcgccggtcaaccgcaagcgctacatgcacaattacaac
ttcccgccgtactccaccggtgagaccggccgcgtcggctcgcccaagcgccgcgagatc
ggccacggcgcgctggccgagcgggcactgctcccggtgctgcccgaccgcgaggagttc
ccctacgcgatccggcaggtgtccgaggcgctgggctccaacggctcgacgtccatgggc
tcggtctgcgcctcgaccctggcgctgctcaacgccggtgtgccgctgcgcgccccggtc
gccggcatcgccatgggcctggtctccgacgaggtcgacggcaagaccgagtacgtcgca
ctgaccgacatcctcggtgccgaggacgccttcggtgacatggacttcaaggtcgccggc
acgcgggacttcgtcaccgcgctgcagctggacaccaagctcgacggcatcccgtccgac
gtgctggcccaggcgctgacccaggcccgcgcggccaggctgcacatcctcgacgtgatg
aacgaggccatcgacgcccccgacgagatgagcccgtacgcgccgcgggtcaccacggtg
cgcatcccggtcgacaagatcggcgcggtcatcggccccaaggggcagatgatcaacgcg
atccaggacgagaccggcgccgacatcaccatcgaggacgacggcacgatctacgtcggc
gcctccgacggcccctcggcccaggcggcggtggaccggatcaacgccatcgccaacccg
cagatgcccaaggtcggcgagcgcttcctcggcacggtcgtcaagaccacgccgttcggc
gccttcgtctccctgctcccgggcaaggacggcctggtgcacatcagcaagctgggtggc
ggcaagcggatcggcaaggtcgaggacgtcgtcaacgtcggcgacaagctgcaggtcgag
atcaccgacatcgacgcccgcggcaagatcagcctcgtgccggtggcggccgagggggac
ggcgccgctgacgccgccccggccggcgacgccgccccggcggccgacgccgcgcccgcg
gaggcgtga
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