Gordonia sp. YC-JH1: CXX93_03940
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Entry
CXX93_03940 CDS
T05256
Name
(GenBank) Ku protein
KO
K10979
DNA end-binding protein Ku
Organism
goc
Gordonia sp. YC-JH1
Pathway
goc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
goc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CXX93_03940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
goc03400
]
CXX93_03940
DNA repair and recombination proteins [BR:
goc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CXX93_03940
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ku
Motif
Other DBs
NCBI-ProteinID:
AUH67649
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All DBs
Position
848644..849504
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AA seq
286 aa
AA seq
DB search
MRSIWRGDLSFGLVNVPVKVYSATESHDRSSHQVDSADGARIRYRRVREGTDTEVEFSKI
ANAYESESGEQVVLTKEDLATLPVNKSPEISILEFVPIDQVDPIYFDKPYYLEPASKSPK
AYVLLAKALETTERLAIANFTLRNRTRLAALRVIDGVMTLQTLLWPDEVRVPDFDFLNAD
VEIRDQELDMASSLIETMASDFDPSQFEDTYQVELGKLIEARADGGQAFSETEEEAPDDD
SEVADLLAALRASVKSRGREVEDEKPPAKKAAKKAPAKKAAKKKSA
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcgatctggagaggtgatctgagctttggtctggtgaacgtgccggtcaaggtg
tactccgccacggagagccacgaccgcagttcgcatcaggtcgattccgccgacggggcc
cggatccggtatcggcgggtgcgcgagggcaccgataccgaggtcgagttctccaagatc
gccaacgcctacgagtccgagagcggcgagcaggtggtgctgaccaaggaagacctcgcg
accctgccggtcaacaagagcccggagatctcgatcctcgagttcgtgccgatcgaccag
gtggacccgatctacttcgacaagccgtactacctggagccggcgtccaagtcgccgaag
gcgtatgtgctgctcgcgaaggcgctggagaccaccgagcgtctcgccattgcgaatttc
acgctccggaaccggacacggctggcagcgctgcgggtcatcgacggcgtgatgaccctg
cagacgctgctgtggccggacgaggtccgggtaccggacttcgacttcctgaacgccgac
gtcgagatccgcgatcaggaactggacatggcgtcgtcgctcatcgagacgatggcctcg
gacttcgaccccagccagttcgaggacacctatcaggtggagctcggaaagctcatcgag
gcgcgagccgacggtggccaggcattctcggagaccgaagaggaagcgcccgacgacgac
tcggaggtcgcggaccttctcgcggcgctgcgggcgtcggtcaagagccgcggccgggag
gtcgaggacgagaaaccgcccgcgaagaaggcggcgaagaaggctccggccaagaaggcc
gccaagaagaagtcggcctga
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