Gordonia sp. YC-JH1: CXX93_04990
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Entry
CXX93_04990 CDS
T05256
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
goc
Gordonia sp. YC-JH1
Pathway
goc00521
Streptomycin biosynthesis
goc00523
Polyketide sugar unit biosynthesis
goc00525
Acarbose and validamycin biosynthesis
goc00541
O-Antigen nucleotide sugar biosynthesis
goc01100
Metabolic pathways
goc01110
Biosynthesis of secondary metabolites
goc01250
Biosynthesis of nucleotide sugars
Module
goc_M00793
dTDP-L-rhamnose biosynthesis
Brite
KEGG Orthology (KO) [BR:
goc00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 O-Antigen nucleotide sugar biosynthesis
CXX93_04990 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
CXX93_04990 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
CXX93_04990 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
CXX93_04990 (rfbB)
00525 Acarbose and validamycin biosynthesis
CXX93_04990 (rfbB)
Enzymes [BR:
goc01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
CXX93_04990 (rfbB)
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GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
3Beta_HSD
NAD_binding_4
Polysacc_synt_2
NAD_binding_10
adh_short
Sacchrp_dh_NADP
KR
Motif
Other DBs
NCBI-ProteinID:
AUH67812
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Position
complement(1068139..1069143)
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AA seq
334 aa
AA seq
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MRVLVTGGAGFIGANFVLRTLATRPDAQLTVLDKFTYAANPSTLQPVADRIRVVRGDIAD
AATVDPLVAESDLVVNFAAESHNDNSLADPSAFVQTNLVGTYTLLEAVRRHDVRLHHIST
DEVYGDLDLDDPTRFTEETAYNPSSPYSSTKAGSDMLVRAWVRSFGIAATISNCSNNYGP
YQHIEKFIPRQITNVLTGVRPKLYGDGRNVRDWIHVDDHNDAVWAVVDRGRIGETYLIGA
DGEVDNRTVVEAILTALGQPADAFDFVTDRAGHDRRYAIDSHRLRTELGWRPAYTDFASG
LAATIAWYRENRDWWAPHKEGVEAAYARTQQILD
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgcgagtgctggtgaccggcggagccggtttcatcggagccaacttcgtgctgcggaca
ctggccacccggcccgacgcccagctgaccgttctcgacaagttcacctacgccgcgaac
ccgtcgacgctgcaaccggtggccgaccggatccgcgtggtccgcggcgacatcgccgac
gccgcgaccgtcgatccgctcgtcgccgaatcggatctcgtggtgaacttcgcggccgaa
tcgcacaacgacaattcgctcgccgacccgtcggcattcgtccagaccaacctcgtcggc
acgtacacgctgctcgaagcagtccgtaggcatgacgtgcgcctccaccacatcagcacc
gacgaggtctacggcgacctcgatctcgacgatccgacgcgtttcaccgaggagacggcc
tacaacccgtcgagcccgtacagctccacgaaggccggcagcgacatgctggtccgcgcg
tgggtccggtcgttcggcatcgccgccaccatctcgaactgctcgaacaactacgggccg
tatcagcacatcgagaagttcattccgcgccagatcacgaacgtgctgaccggggtgcgg
cccaagctctacggcgacgggcgcaacgtccgcgactggatccacgtcgacgaccacaac
gacgccgtctgggccgtcgtcgaccgcggtcggatcggtgagacctatctgatcggcgcc
gacggcgaggtcgacaaccgcacggtggtcgaggcgattctgaccgcgctcggacagccc
gccgacgccttcgacttcgtcaccgaccgcgccggccacgaccgccggtacgcgatcgac
tcccaccgcctccgcaccgaactcgggtggcggccggcgtacaccgatttcgcctccggc
ctcgccgcgacgatcgcgtggtaccgcgagaaccgcgactggtgggcgccgcacaaggag
ggcgtggaagccgcctacgcccggactcagcagatcctcgattga
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