Gordonia sp. YC-JH1: CXX93_04990
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Entry
CXX93_04990 CDS
T05256
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
goc
Gordonia sp. YC-JH1
Pathway
goc00521
Streptomycin biosynthesis
goc00523
Polyketide sugar unit biosynthesis
goc00525
Acarbose and validamycin biosynthesis
goc00541
Biosynthesis of various nucleotide sugars
goc01100
Metabolic pathways
goc01110
Biosynthesis of secondary metabolites
goc01250
Biosynthesis of nucleotide sugars
Module
goc_M00793
dTDP-L-rhamnose biosynthesis, glucose-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
goc00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
CXX93_04990 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
CXX93_04990 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
CXX93_04990 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
CXX93_04990 (rfbB)
00525 Acarbose and validamycin biosynthesis
CXX93_04990 (rfbB)
Enzymes [BR:
goc01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
CXX93_04990 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
3Beta_HSD
RmlD_sub_bind
NAD_binding_4
Polysacc_synt_2
NAD_binding_10
adh_short
Sacchrp_dh_NADP
KR
Motif
Other DBs
NCBI-ProteinID:
AUH67812
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Position
complement(1068139..1069143)
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AA seq
334 aa
AA seq
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MRVLVTGGAGFIGANFVLRTLATRPDAQLTVLDKFTYAANPSTLQPVADRIRVVRGDIAD
AATVDPLVAESDLVVNFAAESHNDNSLADPSAFVQTNLVGTYTLLEAVRRHDVRLHHIST
DEVYGDLDLDDPTRFTEETAYNPSSPYSSTKAGSDMLVRAWVRSFGIAATISNCSNNYGP
YQHIEKFIPRQITNVLTGVRPKLYGDGRNVRDWIHVDDHNDAVWAVVDRGRIGETYLIGA
DGEVDNRTVVEAILTALGQPADAFDFVTDRAGHDRRYAIDSHRLRTELGWRPAYTDFASG
LAATIAWYRENRDWWAPHKEGVEAAYARTQQILD
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgcgagtgctggtgaccggcggagccggtttcatcggagccaacttcgtgctgcggaca
ctggccacccggcccgacgcccagctgaccgttctcgacaagttcacctacgccgcgaac
ccgtcgacgctgcaaccggtggccgaccggatccgcgtggtccgcggcgacatcgccgac
gccgcgaccgtcgatccgctcgtcgccgaatcggatctcgtggtgaacttcgcggccgaa
tcgcacaacgacaattcgctcgccgacccgtcggcattcgtccagaccaacctcgtcggc
acgtacacgctgctcgaagcagtccgtaggcatgacgtgcgcctccaccacatcagcacc
gacgaggtctacggcgacctcgatctcgacgatccgacgcgtttcaccgaggagacggcc
tacaacccgtcgagcccgtacagctccacgaaggccggcagcgacatgctggtccgcgcg
tgggtccggtcgttcggcatcgccgccaccatctcgaactgctcgaacaactacgggccg
tatcagcacatcgagaagttcattccgcgccagatcacgaacgtgctgaccggggtgcgg
cccaagctctacggcgacgggcgcaacgtccgcgactggatccacgtcgacgaccacaac
gacgccgtctgggccgtcgtcgaccgcggtcggatcggtgagacctatctgatcggcgcc
gacggcgaggtcgacaaccgcacggtggtcgaggcgattctgaccgcgctcggacagccc
gccgacgccttcgacttcgtcaccgaccgcgccggccacgaccgccggtacgcgatcgac
tcccaccgcctccgcaccgaactcgggtggcggccggcgtacaccgatttcgcctccggc
ctcgccgcgacgatcgcgtggtaccgcgagaaccgcgactggtgggcgccgcacaaggag
ggcgtggaagccgcctacgcccggactcagcagatcctcgattga
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