Gordonia sp. YC-JH1: CXX93_08955
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Entry
CXX93_08955 CDS
T05256
Name
(GenBank) HU family DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
goc
Gordonia sp. YC-JH1
Brite
KEGG Orthology (KO) [BR:
goc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
goc03032
]
CXX93_08955
03036 Chromosome and associated proteins [BR:
goc03036
]
CXX93_08955
03400 DNA repair and recombination proteins [BR:
goc03400
]
CXX93_08955
DNA replication proteins [BR:
goc03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
CXX93_08955
Chromosome and associated proteins [BR:
goc03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
CXX93_08955
DNA repair and recombination proteins [BR:
goc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
CXX93_08955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HC2
HU-HIG
HU-CCDC81_bac_2
Motif
Other DBs
NCBI-ProteinID:
AUH68453
LinkDB
All DBs
Position
1944026..1944772
Genome browser
AA seq
248 aa
AA seq
DB search
MNKAELIEELTKRLDADRKTATNFVEQAIDTIVRAVNKGESVTITGFGVFEKRRRAARVA
RNPRTGETVKVKATSIPAFRPGAQFKAIVSGKQKLKSGQPAVKRASATPAAGSGTAKKAA
PAKSTAAAKKTTAAKKTTAKKTTATKTTATKTTAAKKTAATKKTAPAKKTAAAKKAPAKK
TAAKKTAPAKTAGAGATATSAAAEKTAPAKKATAKKTSAAKKTTAAKKSAPAKKAAAKKS
APTKGADD
NT seq
747 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaggcagaactcatcgaggaactcaccaaaagactcgatgcggacaggaagaca
gccaccaacttcgtcgagcaggcgatcgacaccatcgttcgcgccgtgaacaagggtgag
agcgtcacgatcaccggtttcggcgtcttcgagaagcgccgtcgtgcagcacgcgtggca
cgcaatccccgcaccggagaaacggtgaaggtgaaggccacgtcgatcccggccttccgg
ccgggtgctcagttcaaggcgatcgtctccggcaagcagaagctcaagtcggggcagccc
gcggtgaagcgcgcgtcggcgacaccggccgccggttccggaaccgccaagaaggccgca
ccggctaagtccaccgctgcggcgaagaagaccaccgcggcgaagaagacgacggccaag
aagacgacggccacgaagacgacggccacgaagaccacggccgcgaagaagacggccgcc
acgaagaagacggctccggcgaagaagaccgccgccgcgaagaaggcgcccgcgaagaag
accgcggccaagaagacggctccggcgaagaccgccggcgcgggtgcgacggccacgagc
gccgcggccgagaagacggcaccggcgaagaaggcgacagccaagaagacctctgctgcc
aagaagacgacggcggccaagaagtccgctccggcgaagaaggccgccgccaagaagtcc
gcaccgacgaagggcgccgacgactga
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