Gordonia sp. YC-JH1: CXX93_10960
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Entry
CXX93_10960 CDS
T05256
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
goc
Gordonia sp. YC-JH1
Pathway
goc03030
DNA replication
goc03430
Mismatch repair
goc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
goc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CXX93_10960
03430 Mismatch repair
CXX93_10960
03440 Homologous recombination
CXX93_10960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
goc03032
]
CXX93_10960
03400 DNA repair and recombination proteins [BR:
goc03400
]
CXX93_10960
Enzymes [BR:
goc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CXX93_10960
DNA replication proteins [BR:
goc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CXX93_10960
DNA repair and recombination proteins [BR:
goc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CXX93_10960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
AUH68785
LinkDB
All DBs
Position
2348597..2352133
Genome browser
AA seq
1178 aa
AA seq
DB search
MSGSFVHLHNHTEYSMLDGAAKMSPLFAEAERLGMTAIGMTDHGNMFGASEFYNTARKHG
IKPIIGIEAYIAPESRFNTKRIQWGTRDQKSDDVSGSGAYTHMTMVAENATGLRNLFKLS
SLASIEGQLGKWARMDAEIIAEHAEGIIATTGCPSGEVQTRLRLGHEAEALEAAGKWQEI
FGKENFYLELMEHGLEIEQRVRSGLLDIGRKLGIKPLVTNDCHYVTRDHAKAHEALLCLQ
TGKTLSDPTRFKFDGDGYYLKSAEEMRALWDDVVPGGCDSTLEIGERVQSYEEVYAHHDR
MPIFPVPDGYTQETWLAREVMAGLDRRFDGNPPADYISRAEYELSVINQMGFPAYFLVVG
DLIRHALEVGIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPERVSMPDIDID
FDDRRRGEMITYASQKWGHDKVAQVITFGTIKTKAAIKDSARVQFGQPGFAIADRITKAL
PPPIMAKDIPVWGITDPEHERYSEATEVRTLIETDPDVKRIYDTALGLEGLVRNAGVHAC
AVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDAIENIK
TNRGIDLDLDKLPLEDPKTYELLARGDTLGVFQLDGAAMRELLKMMQPTGFEDIVAVLAL
YRPGPMGVNAHTDYAKRKNGLQDVKPIHPELEEPLKEILAETYGLIVYQEQIMQIAQKVA
GYSLGQADLLRRAMGKKKKEILDEAYDGFAEGMKNNGFSQGAITALWDTVLPFAGYAFNK
SHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAIYLADCRKMGITVLPPDVNE
SRADFAAVGEDIRFGLAAIRNVGSGVVSSIISAREEKGTYTSFSDYLGKIDVQACSKKVT
ESLIKAGGFDSLGHDRKGLFLVHSEAIDAVLSTKKAEAVGQFDLFGGVGDDDGGASDVFA
VKVPEDEWETKHKLALERDMLGLYVSGHPLAGLEHAIAAQTDTSITALLEGSVADGAQIT
IGGIISSVTRRVNKKGEPWAAVQLEDMVGGVEVYFFPRAYVAYGMDLVPDNIVLVKARVN
KRDDSTMISANDLAVPDLSAVGTTKPLNLTLSARVCTPDRVSALKQILVRHPGTSDVHVT
LVSDRKQTQLRLMDSLRVAPSSALMGDLKALLGPSCLT
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgggtcgttcgttcatcttcacaatcacaccgagtactcgatgctcgacggtgcc
gcgaagatgtccccgttgttcgccgaggccgagcgcctgggcatgacggcgatcgggatg
accgaccacggcaacatgttcggtgcgagcgagttctacaacaccgcgcgcaagcacggc
atcaagccgatcatcggcatcgaggcgtacatcgcaccggagtcccgtttcaacactaag
cggatccagtggggcacgcgcgaccagaagtccgacgacgtctccggttcgggtgcgtac
acgcatatgacgatggtcgccgagaacgccaccgggctgcggaacctcttcaaactgtcg
tcgctggcgtcgatcgagggacagctcggcaagtgggcgcgtatggacgccgagatcatc
gccgagcacgccgaagggatcatcgcgaccaccggctgcccgtccggtgaggtgcagacg
cggctgcggctgggccacgaggccgaggctctcgaggcggcgggcaagtggcaggagatc
ttcggcaaggagaacttctacctcgagctgatggagcacggcctcgagatcgagcagcgg
gtgcggtcggggctcctcgacatcggccgcaagctcggcatcaagccgctggtcaccaac
gactgtcactacgtcacccgcgatcacgccaaggcgcacgaggcgctgctgtgcctccag
acgggcaagacgctgtcggacccgacacggttcaagttcgacggcgacggctactacctc
aagtcggcggaggagatgcgagcgctgtgggacgacgtcgtccccggcggctgcgattcg
acgctcgagatcggcgaacgcgtgcagtcgtacgaggaggtctacgcgcaccacgaccgg
atgccgatcttcccggtgccggacggctacacgcaggagacgtggctggcgcgcgaagtg
atggccggtctggaccgccggttcgacggcaatccgcccgcggactacatctcgcgcgcc
gagtacgaactgtcggtcatcaaccagatgggtttcccggcctacttcctcgtcgtcggc
gacctcatccggcacgccctggaggtcgggatccgcgtcgggccgggacgaggcagcgcc
gcggggtcgctggtggcctacgcgctcggcatcacgaacatcgatcccattccgcacggt
ctgctgttcgagcggttcctcaaccccgagcgcgtgtcgatgcccgacatcgacatcgac
ttcgacgaccgtcgccgcggtgagatgatcacctacgcctcccagaagtggggccacgac
aaagtggctcaggtcatcaccttcggcacgatcaagaccaaggccgcgatcaaggactcg
gcccgcgtccaattcggtcagccgggcttcgcgatcgcagaccggatcaccaaggcgctc
ccgccgccgatcatggccaaggacatcccggtctggggcatcaccgatcccgagcacgag
cggtactcggaggccaccgaggtccgcacgctgatcgagaccgatccggacgtcaagcgg
atctacgacaccgccctcggcctggaggggctggtccgcaacgcgggcgtgcacgcctgc
gcggtgatcatgtcgagcgaaccgctcaccgacgcgatcccggtctggaagcgtgcgcag
gacggcgccatcatcaccggttgggactatccctcgtgcgaggccatcggtctgctcaag
atggacttcctcgggctgcgcaacctgaccgtcatcggtgacgcgatcgagaacatcaag
accaaccgcggcatcgacctcgatctcgacaagctgccgctcgaggatccgaagacctac
gagctgctggcgcggggcgacacgctcggcgtcttccagctcgacggcgcggccatgcgc
gagctgctgaagatgatgcagcccaccggcttcgaagacatcgtcgccgtgttggcgctg
taccgcccggggccgatgggtgtgaacgcgcacaccgactacgccaagcggaagaacggt
ctgcaggacgtcaagccgatccatcccgagttggaggagccgctcaaggagatcctggcg
gagacctacggcctgatcgtctaccaggagcagatcatgcagatcgctcagaaggtggcg
ggctactcgctcggacaggccgacctgctccgtcgtgcgatgggaaagaagaagaaggag
atcctcgacgaggcctacgacggtttcgcggaggggatgaagaacaacggcttctcacag
ggggcgatcaccgccctgtgggacacggttctgccgttcgccggctacgccttcaacaaa
tcgcacgccgccggctacgggctggtctcgttctggaccgcctatctcaaggccaactac
ccggccgagtacatggcggggctgctgacgtcggtcggcgacgacaaggacaaagcggcg
atctacctcgcggactgtcgcaagatgggcatcacggtgctgccacccgacgtcaacgag
tcgcgtgccgacttcgccgcggtgggggaggacatccgattcggtctggccgcgatccgc
aacgtcgggtccggagtggtctcctcgatcatctcggcgcgcgaggagaagggcacctac
acgagcttctcggactacttgggcaagatcgacgtgcaggcgtgcagcaagaaggtcacc
gagtcgctgatcaaagccggcggtttcgattcgctcggtcacgaccgcaagggcctgttc
ctcgttcactccgaagcgatcgacgccgtgctgtcgaccaagaaggccgaagcggtcggc
cagttcgacctcttcggcggtgtcggagacgacgacggcggtgcctcggacgtgttcgcg
gtcaaggtgccggaggacgagtgggagaccaagcacaagctcgctctcgaacgagacatg
ctgggcctgtacgtgtccggccacccactggcaggactggagcacgcgatcgcggcgcag
accgacacctcgatcaccgcgctcctcgaagggtcggtggccgacggcgcgcagatcacc
atcggcggcatcatctcctcggtgacccgacgggtgaacaagaagggcgagccgtgggcg
gcggtccagctcgaggacatggtgggcggcgtcgaggtgtacttcttcccgcgcgcgtac
gtcgcgtacgggatggacctggtgcccgacaacatcgtcctggtcaaggcccgtgtcaac
aagcgtgacgattcgacgatgatcagcgccaacgacctcgcggttccggacctgtcagcg
gtcggcaccaccaagccgctgaatctcacgctgtcggcccgcgtctgcacgcccgaccgg
gtcagcgcgctcaaacagatcctcgtgcgtcatccggggacctccgacgttcatgtgacg
ctggtcagcgaccggaagcagacgcagttgcggttgatggactcactgcgcgtggcgccg
tcgtcggccctgatgggggatttgaaggcactcctgggcccgagctgtctgacctga
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