Gordonia sp. YC-JH1: CXX93_11210
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Entry
CXX93_11210 CDS
T05256
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
goc
Gordonia sp. YC-JH1
Pathway
goc03030
DNA replication
goc03410
Base excision repair
goc03420
Nucleotide excision repair
goc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
goc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CXX93_11210
03410 Base excision repair
CXX93_11210
03420 Nucleotide excision repair
CXX93_11210
03440 Homologous recombination
CXX93_11210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
goc03032
]
CXX93_11210
03400 DNA repair and recombination proteins [BR:
goc03400
]
CXX93_11210
Enzymes [BR:
goc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CXX93_11210
DNA replication proteins [BR:
goc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CXX93_11210
DNA repair and recombination proteins [BR:
goc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
CXX93_11210
NER (nucleotide excision repair)
GGR (global genome repair) factors
CXX93_11210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
DNA_pol_A_exo1
HHH_5
HHH_2
DNA_pol_lambd_f
NYN_YacP
RNA_binding
Motif
Other DBs
NCBI-ProteinID:
AUH68826
LinkDB
All DBs
Position
2400979..2403672
Genome browser
AA seq
897 aa
AA seq
DB search
MLLDGHSLAYRAFFALPAENFKTNTGQSTNAVYGFTSMLINLLRDEEPSHIAAAFDVSRQ
TFRSEMFPEYKAQRSSSPDEFRGQVDLTKDVLDAMGIPVMAIEGYEADDIIATLATAADR
QGYRVLVVTGDRDSLQLVNENITVLYPKRGVSELTRFTPEEVEKKYGLTPSQYPDFAALR
GDPSDNLPGIPGVGEKTAAKWIREYGSFEELVNRADEVRGKVGDSLRANLAGVIMNRRLT
ELVRDMELPAGPDDLALHGWDRDRIHRLFDDLEFKVLRDRLFSTLTSVEPEAESGFDLRG
KRLGSGEVAGWLVEHTASGRSGLAVTGRRAVVGSDVESLAIAGSDGEAAFIDPTSLSVDD
DAALADWLADETRPKAVHEVKWALHALRGRGWTLAGVTSDTALAAYLVRPGQRTFNLDDL
VLRYLRRELKADDAQTDDGQLSLLDDDADAQRAADQLMLSAQAVAELADTLDTELERIEG
SALLREMELPLAFVLAELECAGIAVDVEHLDALERGFAQRVRDAAEAAYEVIGEQVNLGS
PKQLQAILFDKLDMPKTKKTKTGYTTDADALTSLYEKTEHPFLKHLLEHRDATRLRVTVE
GLQKTVADDQRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDAGRQIRHAFVVAPGPVPIG
AAPVEFESLMTADYSQIEMRIMAHLSEDEGLIEAFNTGEDLHNFVGSRAFGVPVDQVDPQ
MRSRVKAMSYGLAYGLSAYGLAAQLGISREEAKQQMEQYFDRFGGVRDYLHRVVEEARRN
EYTATLFGRRRYLPDLNSDNFQRRQAAERMALNAPIQGTAADIIKVAMINVQNRLRAEKL
SSRMLLQVHDELVIEVARGERETVEAVVRAEMGGAIELSVPLEVSVGYGRSWDDAAH
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atgcttctggacggtcactcgctggcctaccgggcgttcttcgcgttgcccgccgagaac
ttcaagacgaacaccggccagagcaccaacgcggtctacggcttcacgtcgatgctgatc
aatctgctgcgcgacgaggagccgagccacatcgccgccgcgttcgacgtctcccggcag
accttccggtcggagatgttccccgagtacaaggcgcagcggagttcgtcgcccgacgaa
ttccggggccaggtcgacctcaccaaggacgtcctcgacgcgatgggcatcccggtgatg
gcgatcgaggggtacgaggccgacgacatcatcgccacgctcgcgacggccgccgaccgc
caggggtaccgggtcctcgtcgtcaccggcgaccgcgactcactgcagctggtcaacgag
aacatcaccgtgctgtatccgaagcgcggggtgtcggagctcacccgtttcacccccgaa
gaggtggagaagaagtacggcctcacgccgtcgcagtatccggacttcgccgcgctccga
ggcgaccccagcgacaacctcccgggcatcccgggggtcggggagaagacggcggccaaa
tggatccgcgaatacggctcgttcgaggaactggtgaaccgggccgatgaggtgcggggc
aaggtgggtgattcactgcgcgccaatctggccggcgtcatcatgaaccgcaggctgacc
gaactggtccgcgacatggagttgcccgccggccccgacgacctggccctgcacggttgg
gacagggaccggatccaccggctcttcgacgatctcgagttcaaggtcttgcgcgaccgg
ctgttctccaccctgacctcggtggagcccgaggcggagtcgggcttcgacctgcgcggg
aagcgactgggctcgggtgaggtggccgggtggctggtcgagcacaccgcgtcggggcgc
agcggactcgcggtgaccggtcggcgcgcggtggtcggcagcgacgtcgagtcgctcgct
atcgccgggtccgacggagaggccgcgttcatcgatcccacctcgctgagtgtggacgac
gatgcggcgctggcggattggctggccgacgagacccggcccaaggccgtgcacgaggtg
aagtgggccctgcacgcgctccgcggacgcgggtggacgctggccggagtcacctccgac
accgctctcgccgcgtatctggtgcggccgggacagcggaccttcaacctcgacgacctc
gtgctccggtacctgcgacgggagctcaaggcggacgacgcccagaccgacgacggtcag
ctctcgctgctcgacgacgacgccgacgcgcagcgcgcggcagatcaactgatgctgtcg
gcccaggctgtcgccgaactcgccgacacgctggacacggaactggagcggatcgagggc
tcggcgctgctgcgagagatggaacttccgctcgcgttcgttctcgccgaactggagtgc
gcgggcatcgccgtcgacgtcgaacacctggacgcgctcgagcgcgggttcgcgcagcgg
gtgcgcgacgcggccgaggcggcgtacgaggtgatcggcgagcaggtgaacctcgggtcg
cccaaacagctgcaggcgatcctcttcgacaagctcgacatgccgaagacgaagaagacc
aagaccggctacaccaccgacgcggacgctctcacgtcgttgtacgagaagaccgagcat
ccgttcctgaagcatctgctcgagcatcgcgacgccacccggctgcgggtgacggtggag
ggcctccagaagaccgtcgcggacgatcagcgcatccacaccacgttcaatcagaccgtg
gcggcgacgggtcggctgtcctcgacggacccgaacctgcagaacatcccggtgcgcacc
gatgcgggccgccagatccggcacgccttcgtggtggcgccgggcccggtgccgatcggg
gccgcgcccgtggagttcgagagcctgatgacggccgattactcgcagatcgagatgcgg
atcatggcgcacctctcggaggacgagggactgatcgaggccttcaacaccggtgaggac
ctgcacaacttcgtcggttcgcgtgccttcggggttccggtggaccaggtggacccgcag
atgcgttcacgggtcaaggcgatgtcgtacggcctggcctacgggttgtcggcatacggt
ctggccgctcagctcgggatcagccgcgaagaggcgaagcagcagatggagcagtacttc
gatcgcttcggcggcgtccgcgactatcttcaccgcgtcgtcgaggaggcgcgccggaac
gagtacacggccaccctgttcggccggcgccggtatctgcccgacctcaactccgacaac
ttccagcgtcgtcaggccgccgagcggatggcgctcaacgcccccattcagggcaccgcc
gccgacatcatcaaggtggcgatgatcaacgtgcagaaccggttgcgggccgagaagctg
tcgtcgcggatgctgctgcaggtgcacgacgaactggtgatcgaggtcgcccgcggcgag
cgggagacggtggaggcggtggtccgcgccgagatgggcggagcgatcgagctctcggtt
ccactggaggtctcggtcggctacggccggagttgggacgacgccgcgcactga
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