Gordonia sp. YC-JH1: CXX93_11980
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Entry
CXX93_11980 CDS
T05256
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
goc
Gordonia sp. YC-JH1
Pathway
goc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
goc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CXX93_11980 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
goc03400
]
CXX93_11980 (recD)
Enzymes [BR:
goc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CXX93_11980 (recD)
DNA repair and recombination proteins [BR:
goc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CXX93_11980 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
RecD_N
AAA_11
Helicase_RecD
UvrD-helicase
SH3_13
AAA_22
PSII_Pbs31
Mg_chelatase
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AUH68939
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Position
2573478..2575373
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AA seq
631 aa
AA seq
DB search
MTDPSATAGALSDRCAPQRVASGSDLLTTFNAAGVLNAADVHVARRVAALCGGPVDEQVL
LAAALAVRAVRTGSTCVELDRIADLAAAGDDQTPLPWPAPDALRAALAASPLVIGGGTGP
LRPLALAESADGPLLYLRKFFRQEQSIRQILDARAASRPAVDAAALTAALDAAFGAGDTS
GYDRQRAAAALAATSWTTVLAGGPGTGKTYTVARILAVMETLFGGDLRIGLCAPTGRAAA
QLQTAIGEYRREHQTLRSDPAAVTVHRLLGSRPDGTFVRGAGNRLPFDVVVVDETSMLPV
TMMCRLLESLRADTRLILVGDPHQLVSVEAGAVLADLVDRDVTAGAGAVLPDAFTAVCDL
AAADFDSAETSALARGVITLRRGHRYGDRIGEVAEAVNAGDADRVIELIGHGARSEHPVR
LIDPDDADVVRTEAVGWARSLREAARSGDARGAVVALRGHRVLCAHRDGPYGVAGWSRRV
IGWISDDLGGAAGTGRWYPGEPLLVTANDRTQDVYNGDSGVVIDDAGGLAAVFERGHEIK
RLHPSQLADAIPVYAMTIHRSQGSQFGTVTVILPPPDAELLTRELLYTAITRAEREVNIV
GTPESLRAAVGRRVARASGLRTDLVEVVSPA
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacccgtccgcgaccgccggagcactgtcggaccgctgcgcgccgcagcgtgtg
gcctcgggatcggatctgctcacgacgttcaacgcggcgggtgtgctgaacgccgccgat
gtgcacgtcgccaggcgcgtcgcagcgctgtgcggcggacccgtcgacgagcaggtgctc
cttgccgcagcgctggcggtccgtgccgtccggaccggttccacctgcgtcgagctggac
aggatcgccgatctcgcggcggccggtgacgaccagacgccgctgccgtggcccgcaccc
gacgcgctgcgtgcggcgctggccgcgtcgccgctggtgatcggcggcggcaccggccca
ctgcgaccgctcgccctcgccgaatcggccgacggcccgctgctgtatctgcgcaaattc
ttccggcaggaacagagcatccggcagatcctcgacgcacgcgccgcgagccggcccgcg
gtcgacgcagccgcgctgacggcggcgctcgatgcggcgttcggggccggcgatacgagc
ggctacgaccgccagcgtgccgccgcggcgctggcggccacctcgtggaccaccgtcctc
gcaggcggtcccggtaccggcaagacgtacacggtcgctcgcatcctggccgtgatggag
acgctgttcggcggcgacctccggatcgggctgtgcgcgcccaccggacgcgccgcggcc
cagttgcagacggcgatcggggagtaccgccgcgaacaccagaccctgcggagtgacccc
gccgcggtgaccgtgcatcgcctgctcggatctcggccggacggaacgttcgtccgcggg
gcgggcaaccgtctgcctttcgacgtcgtggtggtcgacgagacctcgatgctcccggtc
acgatgatgtgccgtctgctcgaatcgctgcgcgccgacacccggctcatcctcgtcggc
gatccgcaccagctggtgtcggtggaggcgggcgcggttctcgctgacctcgtcgaccgg
gatgtgaccgccggggccggcgccgtgcttccggacgcgttcacggctgtgtgcgatctc
gcggcggccgacttcgattcggcggagacctccgcactggcgcgcggcgtcatcacgctg
cgccgcggacaccgctacggagaccgcatcggcgaggtcgccgaagcggtcaacgccggc
gacgcggaccgggtgatcgagctcatcggccacggcgcgcggtcggagcatccggtccgg
ctgatcgatccggatgacgccgacgtggtgcggaccgaagccgtgggctgggcacggagc
ctgcgcgaggcggcgcggagcggcgacgcccgcggcgccgtggtggcactccgggggcac
cgcgtgctgtgcgcgcaccgggacggtccctacggggtcgcgggctggtccagacgggtg
atcggctggatcagcgacgacctcggcggtgcggccggaacgggccgctggtatccgggc
gaaccgctgctggtgaccgcgaacgaccggacgcaggacgtctacaacggcgattccgga
gtggtgatcgacgatgcaggcgggctcgccgcggtcttcgaacgcggtcatgagatcaag
cggcttcacccgagtcagctcgccgacgcgattccggtctacgccatgaccattcaccgg
agtcagggcagccagttcggcacggtcaccgtgatcctcccgcccccggacgcggaactg
ctgacgcgggagttgctctacacggcgatcacccgcgccgagcgcgaggtgaacatcgtc
ggcacaccggaatccctgcgcgccgccgtcggccgccgggtggcgcgggcgtcagggctg
cgcaccgatctcgtcgaggtcgtgtcgccggcctga
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